Package: r-bioc-genomicalignments (1.18.1-1)

[ Source: r-bioc-genomicalignments  ]

BioConductor representation and manipulation of short genomic alignments

This BioConductor package provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read counting, computing the coverage, junction detection, and working with the nucleotide content of the alignments.

Other Packages Related to r-bioc-genomicalignments

• dep: libc6 (>= 2.17) [arm64]

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  dep: libc6 (>= 2.4) [not arm64]

• dep: r-api-3.5

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• dep: r-api-bioc-3.8

  virtual package provided by r-bioc-biocgenerics

• dep: r-base-core (>= 3.5.2-1)

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• dep: r-bioc-biocgenerics (>= 0.15.3)

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• dep: r-bioc-biocparallel

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• dep: r-bioc-biostrings (>= 2.47.6)

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• dep: r-bioc-genomeinfodb (>= 1.13.1)

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• dep: r-bioc-genomicranges (>= 1.33.4)

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• dep: r-bioc-iranges (>= 2.15.12)

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• dep: r-bioc-rsamtools (>= 1.31.2)

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• dep: r-bioc-s4vectors (>= 0.19.11)

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• dep: r-bioc-summarizedexperiment (>= 1.9.13)

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• rec: r-bioc-shortread (>= 1.24.0)

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• sug: r-bioc-bsgenome

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• sug: r-bioc-deseq2

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• sug: r-bioc-genomicfeatures

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• sug: r-bioc-rtracklayer

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Download r-bioc-genomicalignments

Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	2,052.3 kB	2,873.0 kB	[list of files]
arm64	2,051.3 kB	2,873.0 kB	[list of files]
armhf	2,048.8 kB	2,844.0 kB	[list of files]
i386	2,047.3 kB	2,874.0 kB	[list of files]