Package: r-bioc-multtest (2.38.0-1)

[ Source: r-bioc-multtest  ]

Bioconductor resampling-based multiple hypothesis testing

Non-parametric bootstrap and permutation resampling-based multiple testing procedures (including empirical Bayes methods) for controlling the family-wise error rate (FWER), generalized family-wise error rate (gFWER), tail probability of the proportion of false positives (TPPFP), and false discovery rate (FDR). Several choices of bootstrap-based null distribution are implemented (centered, centered and scaled, quantile-transformed). Single-step and step-wise methods are available. Tests based on a variety of t- and F-statistics (including t-statistics based on regression parameters from linear and survival models as well as those based on correlation parameters) are included. When probing hypotheses with t-statistics, users may also select a potentially faster null distribution which is multivariate normal with mean zero and variance covariance matrix derived from the vector influence function. Results are reported in terms of adjusted p-values, confidence regions and test statistic cutoffs. The procedures are directly applicable to identifying differentially expressed genes in DNA microarray experiments.

Other Packages Related to r-bioc-multtest

• dep: libc6 (>= 2.14) [amd64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.17) [arm64]

  dep: libc6 (>= 2.7) [armhf, i386]

• dep: r-api-3.5

  virtual package provided by r-base-core

• dep: r-base-core (>= 3.5.1-1)

  GNU R core of statistical computation and graphics system

• dep: r-bioc-biobase

  base functions for Bioconductor

• dep: r-bioc-biocgenerics

  generic functions for Bioconductor

• dep: r-cran-mass

  GNU R package of Venables and Ripley's MASS

• dep: r-cran-survival

  GNU R package for survival analysis

• sug: r-cran-snow

  GNU R package for 'simple network of workstations'

Download r-bioc-multtest

Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	819.8 kB	1,061.0 kB	[list of files]
arm64	817.8 kB	1,058.0 kB	[list of files]
armhf	815.8 kB	1,045.0 kB	[list of files]
i386	820.5 kB	1,065.0 kB	[list of files]