Package: libbio-samtools-perl (1.43-2)

[ Source: libbio-samtools-perl  ]

Perl interface to SamTools library for DNA sequencing

Bio::SamTools provides a Perl interface to the libbam library for indexed and unindexed SAM/BAM sequence alignment databases. It provides support for retrieving information on individual alignments, read pairs, and alignment coverage information across large regions. It also provides callback functionality for calling SNPs and performing other base-by-base functions. Most operations are compatible with the BioPerl Bio::SeqFeatureI interface, allowing BAM files to be used as a backend to the GBrowse genome browser application.

Tags: Software Development: Perl Development, Libraries, Implemented in: implemented-in::c, implemented-in::perl, Role: Development Library, Shared Library

Other Packages Related to libbio-samtools-perl

• dep: libbio-perl-perl

  BioPerl core perl modules

• dep: libc6 (>= 2.15)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: perl (>= 5.28.1-4)

  Larry Wall's Practical Extraction and Report Language

• dep: perlapi-5.28.1

  virtual package provided by perl-base

• dep: zlib1g (>= 1:1.2.3.3)

  compression library - runtime

• enh: gbrowse

  GMOD Generic Genome Browser

• enh: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

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