Paket: fastahack (1.0.0+dfsg-11 und andere)
Links für fastahack
Debian-Ressourcen:
Quellcode-Paket libfastahack herunterladen:
- [libfastahack_1.0.0+dfsg-11.dsc]
- [libfastahack_1.0.0+dfsg.orig.tar.xz]
- [libfastahack_1.0.0+dfsg-11.debian.tar.xz]
Betreuer:
- Debian Med Packaging Team (QS-Seite, E-Mail-Archiv)
- Andreas Tille (QS-Seite)
- Étienne Mollier (QS-Seite)
Externe Ressourcen:
- Homepage [github.com]
Ähnliche Pakete:
utility for indexing and sequence extraction from FASTA files
fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.
Features:
* FASTA index (.fai) generation for FASTA files * Sequence extraction * Subsequence extraction * Sequence statistics (currently only entropy is provided)
Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.
Andere Pakete mit Bezug zu fastahack
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- dep: libc6 (>= 2.34)
- GNU-C-Bibliothek: Laufzeitbibliotheken
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
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- dep: libdisorder0 (>= 0.0.2)
- library for entropy measurement of byte streams
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- dep: libfastahack0 (>= 0.0+git20160702.bbc645f) [amd64, arm64, mips64el, ppc64el]
- library for indexing and sequence extraction from FASTA files (lib)
- dep: libfastahack0 (>= 1.0.0+dfsg) [nicht amd64, arm64, mips64el, ppc64el]
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- dep: libgcc-s1 (>= 3.0) [nicht armel, armhf]
- GCC Support-Bibliothek
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
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- dep: libstdc++6 (>= 13.1)
- GNU-Implementierung der Standard-C++-Bibliothek (Version 3)
fastahack herunterladen
Architektur | Version | Paketgröße | Größe (installiert) | Dateien |
---|---|---|---|---|
amd64 | 1.0.0+dfsg-11+b1 | 12,3 kB | 41,0 kB | [Liste der Dateien] |
arm64 | 1.0.0+dfsg-11+b1 | 11,8 kB | 85,0 kB | [Liste der Dateien] |
armel | 1.0.0+dfsg-11+b1 | 11,7 kB | 36,0 kB | [Liste der Dateien] |
armhf | 1.0.0+dfsg-11+b1 | 11,6 kB | 36,0 kB | [Liste der Dateien] |
i386 | 1.0.0+dfsg-11+b1 | 12,5 kB | 44,0 kB | [Liste der Dateien] |
mips64el | 1.0.0+dfsg-11+b1 | 12,1 kB | 86,0 kB | [Liste der Dateien] |
ppc64el | 1.0.0+dfsg-11+b1 | 12,3 kB | 85,0 kB | [Liste der Dateien] |
riscv64 | 1.0.0+dfsg-11+b1 | 11,7 kB | 37,0 kB | [Liste der Dateien] |
s390x | 1.0.0+dfsg-11+b1 | 12,2 kB | 41,0 kB | [Liste der Dateien] |