Пакет: fastahack (1.0.0+dfsg-11 и други)

[ Източник: libfastahack  ]

utility for indexing and sequence extraction from FASTA files

fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.

Features:

 * FASTA index (.fai) generation for FASTA files
 * Sequence extraction
 * Subsequence extraction
 * Sequence statistics (currently only entropy is provided)

Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.

Други пакети, свързани с fastahack

• dep: libc6 (>= 2.38)

  GNU C Library: Shared libraries
  също и виртуален пакет, предлаган от libc6-udeb

• dep: libdisorder0 (>= 0.0.2)

  library for entropy measurement of byte streams

• dep: libfastahack0 (>= 0.0+git20160702.bbc645f) [amd64, arm64, mips64el, ppc64el]

  library for indexing and sequence extraction from FASTA files (lib)

  dep: libfastahack0 (>= 1.0.0+dfsg) [не amd64, arm64, mips64el, ppc64el]

• dep: libgcc-s1 (>= 3.0) [не armel, armhf]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

Изтегляне на fastahack

Изтегляне за всички налични архитектури

Архитектура	Версия	Големина на пакета	Големина след инсталиране	Файлове
amd64	1.0.0+dfsg-11+b2	12,4 кБ	45,0 кБ	[списък на файловете]
arm64	1.0.0+dfsg-11+b2	11,9 кБ	85,0 кБ	[списък на файловете]
armel	1.0.0+dfsg-11+b2	11,6 кБ	36,0 кБ	[списък на файловете]
armhf	1.0.0+dfsg-11+b2	11,6 кБ	36,0 кБ	[списък на файловете]
i386	1.0.0+dfsg-11+b2	12,6 кБ	44,0 кБ	[списък на файловете]
mips64el	1.0.0+dfsg-11+b2	12,1 кБ	86,0 кБ	[списък на файловете]
ppc64el	1.0.0+dfsg-11+b2	12,3 кБ	85,0 кБ	[списък на файловете]
riscv64	1.0.0+dfsg-11+b2	11,7 кБ	37,0 кБ	[списък на файловете]
s390x	1.0.0+dfsg-11+b2	12,0 кБ	41,0 кБ	[списък на файловете]