Quellcode-Paket: bcbio (1.2.9-2)
[contrib]
Links für bcbio
Debian-Ressourcen:
Betreuer:
Externe Ressourcen:
Die folgenden Binärpakete werden aus diesem Quellcode-Paket gebaut:
- bcbio
- toolkit for analysing high-throughput sequencing data
- python3-bcbio
- library for analysing high-throughput sequencing data
Andere Pakete mit Bezug zu bcbio
-
- adep:
debhelper-compat
(= 13)
- Paket nicht verfügbar
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- adep:
dh-python
- Debian helper tools for packaging Python libraries and applications
-
- adep:
python3-all
- package depending on all supported Python 3 runtime versions
-
- adep:
python3-setuptools
- Erweiterungen für die Python3 Distutils
-
- adep:
python3-gffutils
- Work with GFF and GTF files in a flexible database framework
-
- adep:
python3-mock
- Mock- und Testbibliothek (Python-3-Version)
-
- adep:
python3-pandas
- data structures for "relational" or "labeled" data
-
- adep:
python3-pybedtools
- Python 3 wrapper around BEDTools for bioinformatics work
-
- adep:
python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
-
- adep:
python3-pyvcf
- virtuelles Paket, bereitgestellt durch
python3-vcf
-
- adep:
python3-toolz
- List processing tools and functional utilities
-
- adep:
python3-tornado
- Skalierbarer, nicht blockierender Webserver und Werkzeuge - Python-3-Paket
-
- adep:
python3-yaml
- Python3-Parser und -Emitter für YAML
-
- adep:
python3-scipy
- Wissenschaftliche Werkzeuge für Python 3
-
- adep:
python3-psutil
- Modul mit komfortablen Funktionen für die Prozessverwaltung (Python 3)
-
- adep:
python3-joblib
- tools to provide lightweight pipelining in Python
-
- adep:
atropos
- NGS read trimming tool that is specific, sensitive, and speedy
-
- adep:
bcftools
- Aufruf und Manipulation genomischer Varianten von VCF/BCF-Dateien
-
- adep:
bedtools
- Hilfswerkzeugsammlung zum Vergleich genomischer Merkmale
-
- adep:
biobambam2
- tools for early stage alignment file processing
-
- adep:
bowtie2
- Ultraschnelles und speichersparendes Alignmentprogramm für kurze DNA-Sequenzen
-
- adep:
bwa
- Burrows-Wheeler Aligner
-
- adep:
cnvkit
- Copy number variant detection from targeted DNA sequencing
-
- adep:
fastqc
- quality control for high throughput sequence data
-
- adep:
freebayes
- Bayesian haplotype-based polymorphism discovery and genotyping
-
- adep:
gffread
- GFF/GTF format conversions, region filtering, FASTA sequence extraction
-
- adep:
grabix
- wee tool for random access into BGZF files
-
- adep:
gsort
- sort genomic data
-
- adep:
hisat2
- graph-based alignment of short nucleotide reads to many genomes
-
- adep:
hts-nim-tools
- tools biological sequences: bam-filter, count-reads, vcf-check
-
- adep:
libfreetype6
- Schrift-Engine FreeType 2, Laufzeitbibliothek
-
- adep:
lumpy-sv
- general probabilistic framework for structural variant discovery
-
- adep:
mosdepth
- BAM/CRAM depth calculation biological sequencing
-
- adep:
multiqc
- output integration for RNA sequencing across tools and samples
-
- adep:
perl
- Larry Wall's Practical Extraction und Report Language
-
- adep:
libpicard-java
- Java-Bibliothek zur Bearbeitung von SAM- und BAM-Dateien
-
- adep:
libvcflib-tools
- C++ library for parsing and manipulating VCF files (tools)
-
- adep:
picard-tools
- Command line tools to manipulate SAM and BAM files
-
- adep:
python3-biopython
- Python-3-Bibliothek für die Bioinformatik
-
- adep:
python3-cyvcf2
- VCF parser based on htslib (Python 3)
-
- adep:
python3-geneimpacts
- wraps command line tools to assess variants in gene sequences
-
- adep:
python3-logbook
- logging system for Python that replaces the standard library's module (Python 3)
-
- adep:
python3-nose
- test discovery and running for Python3 unittest
-
- adep:
python3-requests
- Elegante und einfache Python-3-HTTP-Bibliothek, für Menschen gebaut
-
- adep:
python3-pytest
- Einfaches, leistungsstarkes Testen in Python 3
-
- adep:
python3-pytest-mock
- Thin wrapper around mock for easier use with pytest (Python 3 module)
-
- adep:
python3-seqcluster
- analysis of small RNA in NGS data
-
- adep:
pythonpy
- 'python -c', with tab completion and shorthand
-
- adep:
rapmap
- rapid sensitive and accurate DNA read mapping via quasi-mapping
-
- adep:
rna-star
- ultrafast universal RNA-seq aligner
-
- adep:
r-base-core
- GNU R - System für statistische Berechnungen und Grafik - Kern
-
- adep:
r-bioc-htsfilter
- GNU R filter replicated high-throughput transcriptome sequencing data
-
- adep:
r-bioc-degreport
- BioConductor report of DEG analysis
-
- adep:
r-bioc-purecn
- copy number calling and SNV classification using targeted short read sequencing
-
- adep:
r-bioc-summarizedexperiment
- BioConductor assay container
-
- adep:
r-cran-tidyverse
- Easily Install and Load the 'Tidyverse'
-
- adep:
r-bioc-titancna
- Subclonal copy number and LOH prediction from whole genome sequencing
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- adep:
r-bioc-tximport
- transcript-level estimates for biological sequencing
-
- adep:
r-other-wasabi
- prepare Sailfish and Salmon output for downstream analysis using GNU R
-
- adep:
salmon
- wicked-fast transcript quantification from RNA-seq data
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- adep:
samblaster
- marks duplicates, extracts discordant/split reads
-
- adep:
samtools
- processing sequence alignments in SAM, BAM and CRAM formats
-
- adep:
seqan-apps
- C++ library for the analysis of biological sequences
-
- adep:
seqtk
- Fast and lightweight tool for processing sequences in the FASTA or FASTQ format
-
- adep:
snpeff
- genetic variant annotation and effect prediction toolbox - tool
-
- adep:
subread
- toolkit for processing next-gen sequencing data
-
- adep:
tabix
- generic indexer for TAB-delimited genome position files
-
- adep:
tophat-recondition
- post-processor for TopHat unmapped reads
-
- adep:
umis
- tools for processing UMI RNA-tag data
-
- adep:
vcfanno
- annotate a VCF with other VCFs/BEDs/tabixed files
-
- adep:
vt
- toolset for short variant discovery in genetic sequence data
-
- adep:
wham-align
- Wisconsin's High-Throughput Alignment Method
-
- adep:
xonsh
- Python-powered, cross-platform, Unix-gazing shell
-
- adep:
libhts-dev
- C-Bibliothek für Hochdurchsatz-Sequenzierungsdatenformate - Entwicklungsdateien
-
- adep:
python3-sphinx
- Dokumentationsgenerator für Python-Projekte
