Paket: r-bioc-isoformswitchanalyzer (2.4.0+ds-1 und andere)

[ Quellcode: r-bioc-isoformswitchanalyzer  ]

Identify, Annotate and Visualize Alternative Splicing and

Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data. Analysis of alternative splicing and isoform switches with predicted functional consequences (e.g. gain/loss of protein domains etc.) from quantification of all types of RNASeq by tools such as Kallisto, Salmon, StringTie, Cufflinks/Cuffdiff etc.

Andere Pakete mit Bezug zu r-bioc-isoformswitchanalyzer

• dep: r-api-4.0

  virtuelles Paket, bereitgestellt durch r-base-core

• dep: r-api-bioc-3.16 [x32]

  Paket nicht verfügbar

• dep: r-api-bioc-3.18 [hppa, ia64, sh4]

  Paket nicht verfügbar

• dep: r-api-bioc-3.19 [nicht hppa, ia64, sh4, x32]

  virtuelles Paket, bereitgestellt durch r-bioc-biocgenerics

• dep: r-base-core (>= 4.2.2.20221110-1) [x32]

  GNU R - System für statistische Berechnungen und Grafik - Kern

• dep: r-bioc-biobase [hppa, ia64, sh4, x32]

  base functions for Bioconductor

  dep: r-bioc-biobase (>= 2.64.0) [nicht hppa, ia64, sh4, x32]

• dep: r-bioc-biocgenerics [hppa, ia64, sh4, x32]

  generic functions for Bioconductor

  dep: r-bioc-biocgenerics (>= 0.50.0) [nicht hppa, ia64, sh4, x32]

• dep: r-bioc-biocparallel [hppa, ia64, sh4]

  BioConductor facilities for parallel evaluation

  dep: r-bioc-biocparallel (>= 1.38.0) [nicht hppa, ia64, sh4, x32]

• dep: r-bioc-biostrings (>= 2.50.0) [hppa, ia64, sh4, x32]

  GNU R string objects representing biological sequences

  dep: r-bioc-biostrings (>= 2.72.1) [nicht hppa, ia64, sh4, x32]

• dep: r-bioc-bsgenome [hppa, ia64, sh4, x32]

  BioConductor infrastructure for Biostrings-based genome data packages

  dep: r-bioc-bsgenome (>= 1.72.0) [nicht hppa, ia64, sh4, x32]

• dep: r-bioc-dexseq [hppa, ia64, sh4, x32]

  GNU R inference of differential exon usage in RNA-Seq

  dep: r-bioc-dexseq (>= 1.50.0) [nicht hppa, ia64, sh4, x32]

• dep: r-bioc-drimseq [x32]

  Differential transcript usage and tuQTL analyses with

• dep: r-bioc-edger [hppa, ia64, sh4, x32]

  Empirische Analyse von digitalen Genexpressionsdaten mit R

  dep: r-bioc-edger (>= 4.2.0) [nicht hppa, ia64, sh4, x32]

• dep: r-bioc-genomeinfodb [hppa, ia64, sh4, x32]

  BioConductor utilities for manipulating chromosome identifiers

  dep: r-bioc-genomeinfodb (>= 1.40.1) [nicht hppa, ia64, sh4, x32]

• dep: r-bioc-genomicranges [hppa, ia64, sh4, x32]

  BioConductor representation and manipulation of genomic intervals

  dep: r-bioc-genomicranges (>= 1.56.1) [nicht hppa, ia64, sh4, x32]

• dep: r-bioc-iranges [hppa, ia64, sh4, x32]

  GNU R low-level containers for storing sets of integer ranges

  dep: r-bioc-iranges (>= 2.38.1) [nicht hppa, ia64, sh4, x32]

• dep: r-bioc-limma [hppa, ia64, sh4, x32]

  linear models for microarray data

  dep: r-bioc-limma (>= 3.60.3) [nicht hppa, ia64, sh4, x32]

• dep: r-bioc-pfamanalyzer [hppa, ia64, sh4]

  GNU R identification of domain isotypes in pfam data

  dep: r-bioc-pfamanalyzer (>= 1.4.0) [nicht hppa, ia64, sh4, x32]

• dep: r-bioc-pwalign (>= 1.0.0-2~0exp1) [nicht hppa, ia64, sh4, x32]

  Perform pairwise sequence alignments

• dep: r-bioc-rtracklayer [hppa, ia64, sh4, x32]

  GNU R interface to genome browsers and their annotation tracks

  dep: r-bioc-rtracklayer (>= 1.64.0) [nicht hppa, ia64, sh4, x32]

• dep: r-bioc-s4vectors [hppa, ia64, sh4]

  BioConductor S4 implementation of vectors and lists

  dep: r-bioc-s4vectors (>= 0.42.1) [nicht hppa, ia64, sh4, x32]

• dep: r-bioc-saturn (>= 1.12.0) [nicht hppa, ia64, sh4, x32]

  scalable analysis of differential transcript usage for RNA-sequencing

  dep: r-bioc-saturn (>= 1.7.0) [hppa, ia64, sh4]

• dep: r-bioc-summarizedexperiment [hppa, ia64, sh4]

  BioConductor assay container

  dep: r-bioc-summarizedexperiment (>= 1.34.0) [nicht hppa, ia64, sh4, x32]

• dep: r-bioc-sva [hppa, ia64, sh4]

  GNU R Surrogate Variable Analysis

  dep: r-bioc-sva (>= 3.52.0) [nicht hppa, ia64, sh4, x32]

• dep: r-bioc-tximeta (>= 1.22.1) [nicht hppa, ia64, sh4, x32]

  Transcript Quantification Import with Automatic Metadata

  dep: r-bioc-tximeta (>= 1.7.12) [hppa, ia64, sh4, x32]

• dep: r-bioc-tximport (>= 1.32.0) [nicht hppa, ia64, sh4, x32]

  transcript-level estimates for biological sequencing

  dep: r-bioc-tximport (>= 1.7.1) [hppa, ia64, sh4, x32]

• dep: r-bioc-xvector [hppa, ia64, sh4, x32]

  BioConductor representation and manpulation of external sequences

  dep: r-bioc-xvector (>= 0.44.0) [nicht hppa, ia64, sh4, x32]

• dep: r-cran-dbi

  GNU-R-Paket, stellt eine allgemeine Datenbankschnittstelle bereit

• dep: r-cran-dplyr

  GNU R grammar of data manipulation

• dep: r-cran-futile.logger

  logging utility for GNU R

• dep: r-cran-ggplot2 [x32]

  Implementierung der »Grammar of Graphics«

  dep: r-cran-ggplot2 (>= 3.3.5) [nicht x32]

• dep: r-cran-gridextra

  GNU R: Erweiterungen für das grid-Paket

• dep: r-cran-magrittr

  GNU R forward-pipe operator

• dep: r-cran-plyr

  tools for splitting, applying and combining data

• dep: r-cran-rcolorbrewer

  GNU R package providing suitable color palettes

• dep: r-cran-rcurl

  GNU R General network (HTTP/FTP/...) client interface

• dep: r-cran-readr

  GNU R package to read rectangular text data

• dep: r-cran-reshape2

  Flexibly reshape data: a reboot of the reshape package

• dep: r-cran-stringr

  Erleichtert die Arbeit mit Strings

• dep: r-cran-tibble

  GNU R Simple Data Frames

• dep: r-cran-tidyr [nicht x32]

  GNU R package to easily tidy data

• dep: r-cran-venndiagram

  Generate High-Resolution Venn and Euler Plots

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rmarkdown

  Konvertierung von R-Markdown-Dokumenten in verschiedene Formate

r-bioc-isoformswitchanalyzer herunterladen

Download für alle verfügbaren Architekturen

Architektur	Version	Paketgröße	Größe (installiert)	Dateien
alpha (inoffizielle Portierung)	2.4.0+ds-1	4.017,9 kB	4.769,0 kB	[Liste der Dateien]
amd64	2.4.0+ds-1	4.018,4 kB	4.718,0 kB	[Liste der Dateien]
arm64	2.4.0+ds-1	4.018,6 kB	4.770,0 kB	[Liste der Dateien]
hppa (inoffizielle Portierung)	2.2.0+ds-1	4.010,0 kB	4.701,0 kB	[Liste der Dateien]
ia64 (inoffizielle Portierung)	2.2.0+ds-1	4.010,7 kB	4.701,0 kB	[Liste der Dateien]
mips64el	2.4.0+ds-1	4.018,4 kB	4.770,0 kB	[Liste der Dateien]
ppc64 (inoffizielle Portierung)	2.4.0+ds-1	4.018,4 kB	4.769,0 kB	[Liste der Dateien]
ppc64el	2.4.0+ds-1	4.018,5 kB	4.770,0 kB	[Liste der Dateien]
riscv64	2.4.0+ds-1	4.018,3 kB	4.710,0 kB	[Liste der Dateien]
s390x	2.4.0+ds-1	4.018,5 kB	4.710,0 kB	[Liste der Dateien]
sh4 (inoffizielle Portierung)	2.2.0+ds-1	4.009,9 kB	4.761,0 kB	[Liste der Dateien]
x32 (inoffizielle Portierung)	1.20.0+ds-1	3.589,3 kB	4.202,0 kB	[Liste der Dateien]