Paket: topp (2.4.0-real-1)

[ Quellcode: openms  ]

set of programs implementing The OpenMS Proteomic Pipeline

TOPP (the OpenMS proteomic pipeline) is a pipeline for the analysis of HPLC/MS data. It consists of a set of numerous small applications that can be chained together to create analysis pipelines tailored for a specific problem. The applications make use of the libopenms library. Some examples of these applications are :

  - TOPPView: A viewer for mass spectrometry data.
  - TOPPAS: An assistant for GUI-driven TOPP workflow design.
  - DTAExtractor: Extracts spectra of an MS run file to several
    files in DTA format.
  - FileConverter:  Converts between different MS file formats.
  - FileFilter: Extracts or manipulates portions of data from peak,
    feature or consensus feature files.
  - SpectraMerger: Merges spectra from an LC/MS map, either by
    precursor or by RT blocks.
  - BaselineFilter: Removes the baseline from profile spectra using a
    top-hat filter.
  - InternalCalibration: Applies an internal calibration.
  - PTModel: Trains a model for the prediction of proteotypic
    peptides from a training set.
  - RTPredict: Predicts retention times for peptides using a model
    trained by RTModel.
  - ExecutePipeline: Executes workflows created by TOPPAS.

Markierungen: GUI-Baukasten: Qt

Andere Pakete mit Bezug zu topp

• dep: coinor-libcbc3

  Coin-or branch-and-cut mixed integer programming solver (shared libraries)

• dep: coinor-libcgl1

  COIN-OR Cut Generation Library

• dep: coinor-libclp1

  Coin-or linear programming solver (shared libraries)

• dep: coinor-libcoinutils3v5

  Coin-or collection of utility classes (binaries and libraries)

• dep: coinor-libosi1v5

  COIN-OR Open Solver Interface

• dep: libboost-date-time1.67.0

  Sammlung von Bibliotheken für Datum/Zeit, basierend auf generischen Programmierkonzepten

• dep: libboost-iostreams1.67.0

  Boost.Iostreams-Bibliothek

• dep: libboost-math1.67.0

  Bibliothek Boost.Math

• dep: libboost-regex1.67.0 (>= 1.67.0-10)

  C++-Bibliothek für reguläre Ausdrücke

• dep: libbz2-1.0

  Hochwertiger, Blöcke sortierender Dateikomprimierer - Laufzeitbibliothek

• dep: libc6 (>= 2.14) [amd64]

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

  dep: libc6 (>= 2.17) [arm64]

  dep: libc6 (>= 2.4) [i386]

• dep: libgcc1 (>= 1:3.0)

  GCC Support-Bibliothek

• dep: libglpk40 (>= 4.59)

  linear programming kit with integer (MIP) support

• dep: libgomp1 (>= 4.9)

  Unterstützungsbibliothek für GCC OpenMP (GOMP)

• dep: libopenms2.4.0 (= 2.4.0-real-1)

  library for LC/MS data management and analysis - runtime

• dep: libqt5core5a (>= 5.11.0~rc1) [nicht arm64]

  Qt-5-Basismodul

  dep: libqt5core5a (>= 5.7.0) [arm64]

• dep: libqt5gui5 (>= 5.8.0)

  Qt-5-GUI-Modul

• dep: libqt5network5 (>= 5.7.0)

  Qt-5-Netzwerkmodul

• dep: libqt5svg5 (>= 5.6.0~beta)

  Qt-5-Modul für skalierbare Vektorgrafiken (SVG)

• dep: libqt5widgets5 (>= 5.7.0)

  Qt-5-Widgetmodul

• dep: libsqlite3-0 (>= 3.5.9)

  Laufzeit-Bibliothek für SQLite 3

• dep: libstdc++6 (>= 5.2)

  GNU-Implementierung der Standard-C++-Bibliothek (Version 3)

• dep: libsvm3

  Bibliothek zur Implementierung von Support Vector Machines

• dep: libwildmagic5 (>= 5.13)

  libraries for mathematics, physics, numerical methods - runtime

• dep: libxerces-c3.2

  validating XML parser library for C++

• dep: openms-common (= 2.4.0-real-1)

  package for LC/MS data management and analysis - shared data

• dep: zlib1g (>= 1:1.1.4)

  Kompressions-Bibliothek - Laufzeit

• sug: openms-doc

  package for LC/MS data management and analysis - documentation

topp herunterladen

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amd64	2.656,4 kB	15.117,0 kB	[Liste der Dateien]
arm64	2.362,2 kB	13.689,0 kB	[Liste der Dateien]
i386	2.809,1 kB	15.051,0 kB	[Liste der Dateien]