[ 源代码： openms ]
软件包：topp（2.4.0-real-1）
set of programs implementing The OpenMS Proteomic Pipeline
TOPP (the OpenMS proteomic pipeline) is a pipeline for the analysis of HPLC/MS data. It consists of a set of numerous small applications that can be chained together to create analysis pipelines tailored for a specific problem. The applications make use of the libopenms library. Some examples of these applications are :
- TOPPView: A viewer for mass spectrometry data.
- TOPPAS: An assistant for GUI-driven TOPP workflow design.
- DTAExtractor: Extracts spectra of an MS run file to several
files in DTA format.
- FileConverter: Converts between different MS file formats.
- FileFilter: Extracts or manipulates portions of data from peak,
feature or consensus feature files.
- SpectraMerger: Merges spectra from an LC/MS map, either by
precursor or by RT blocks.
- BaselineFilter: Removes the baseline from profile spectra using a
top-hat filter.
- InternalCalibration: Applies an internal calibration.
- PTModel: Trains a model for the prediction of proteotypic
peptides from a training set.
- RTPredict: Predicts retention times for peptides using a model
trained by RTModel.
- ExecutePipeline: Executes workflows created by TOPPAS.
其他与 topp 有关的软件包
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- dep: coinor-libcbc3
- Coin-or branch-and-cut mixed integer programming solver (shared libraries)
-
- dep: coinor-libcgl1
- COIN-OR Cut Generation Library
-
- dep: coinor-libclp1
- Coin-or linear programming solver (shared libraries)
-
- dep: coinor-libcoinutils3v5
- Coin-or collection of utility classes (binaries and libraries)
-
- dep: coinor-libosi1v5
- COIN-OR Open Solver Interface
-
- dep: libboost-date-time1.67.0
- set of date-time libraries based on generic programming concepts
-
- dep: libboost-iostreams1.67.0
- Boost.Iostreams Library
-
- dep: libboost-math1.67.0
- Boost.Math Library
-
- dep: libboost-regex1.67.0 (>= 1.67.0-10)
- regular expression library for C++
-
- dep: libbz2-1.0
- 高品质块排序文件压缩程序库 - 运行时库
-
- dep: libc6 (>= 2.14) [amd64]
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
- dep: libc6 (>= 2.17) [arm64]
- dep: libc6 (>= 2.4) [i386]
-
- dep: libgcc1 (>= 1:3.0)
- GCC 支持库
-
- dep: libglpk40 (>= 4.59)
- linear programming kit with integer (MIP) support
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- dep: libgomp1 (>= 4.9)
- GCC OpenMP（GOMP）支持库
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- dep: libopenms2.4.0 (= 2.4.0-real-1)
- library for LC/MS data management and analysis - runtime
-
- dep: libqt5core5a (>= 5.11.0~rc1) [除 arm64]
- Qt 5 核心模块
- dep: libqt5core5a (>= 5.7.0) [arm64]
-
- dep: libqt5gui5 (>= 5.8.0)
- Qt 5 GUI module
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- dep: libqt5network5 (>= 5.7.0)
- Qt 5 network module
-
- dep: libqt5svg5 (>= 5.6.0~beta)
- Qt 5 SVG module
-
- dep: libqt5widgets5 (>= 5.7.0)
- Qt 5 widgets 模块
-
- dep: libsqlite3-0 (>= 3.5.9)
- SQLite 3 共享库
-
- dep: libstdc++6 (>= 5.2)
- GNU 标准 C++ 库，第3版
-
- dep: libsvm3
- library implementing support vector machines
-
- dep: libwildmagic5 (>= 5.13)
- libraries for mathematics, physics, numerical methods - runtime
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- dep: libxerces-c3.2
- validating XML parser library for C++
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- dep: openms-common (= 2.4.0-real-1)
- package for LC/MS data management and analysis - shared data
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- dep: zlib1g (>= 1:1.1.4)
- 压缩库 - 运行时
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- sug: openms-doc
- package for LC/MS data management and analysis - documentation