Paket: density-fitness (1.0.0-2)

[ Quellcode: density-fitness  ]

Calculates per-residue electron density scores

The program density-fitness calculates electron density metrics, for main- (includes Cβ atom) and side-chain atoms of individual residues.

For this calculation, the program uses the structure model in either PDB or mmCIF format and the electron density from the 2mFo-DFc and mFo-DFc maps. If these maps are not readily available, the MTZ file and model can be used to calculate maps clipper. Density-fitness support both X-ray and electron diffraction data.

This program is essentially a reimplementation of edstats, a program available from the CCP4 suite. However, the output now contains only the RSR, SRSR and RSCC fields as in edstats with the addition of EDIAm and OPIA and no longer requires pre-calculated map coefficients.

Andere Pakete mit Bezug zu density-fitness

• dep: libboost-iostreams1.74.0 (>= 1.74.0)

  Boost.Iostreams-Bibliothek

• dep: libboost-program-options1.74.0 (>= 1.74.0)

  C++-Bibliothek für Programmoptionen

• dep: libc6 (>= 2.14) [amd64]

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.4) [nicht amd64, arm64, ppc64el]

• dep: libcifpp1 (>= 1.0.1)

  Library files for libcifpp

• dep: libclipper2 (>= 2.1.20201109)

  object oriented library for crystallographic computing

• dep: libgcc-s1 (>= 3.0) [nicht armel, armhf]

  GCC Support-Bibliothek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libpdb-redo1 (>= 1.0.1) [mips64el, mipsel]

  Library file for libpdb-redo

  dep: libpdb-redo1 (>= 1.0.2) [nicht mips64el, mipsel]

• dep: libstdc++6 (>= 10.2) [armel]

  GNU-Implementierung der Standard-C++-Bibliothek (Version 3)

  dep: libstdc++6 (>= 9) [nicht armel]

• dep: libzeep5 (>= 5.0.2)

  Library file for libzeep

density-fitness herunterladen

Download für alle verfügbaren Architekturen

Architektur	Paketgröße	Größe (installiert)	Dateien
amd64	101,7 kB	375,0 kB	[Liste der Dateien]
arm64	93,6 kB	359,0 kB	[Liste der Dateien]
armel	85,3 kB	314,0 kB	[Liste der Dateien]
armhf	86,6 kB	254,0 kB	[Liste der Dateien]
i386	106,5 kB	361,0 kB	[Liste der Dateien]
mips64el	95,9 kB	437,0 kB	[Liste der Dateien]
mipsel	95,2 kB	405,0 kB	[Liste der Dateien]
ppc64el	105,4 kB	467,0 kB	[Liste der Dateien]
s390x	92,9 kB	383,0 kB	[Liste der Dateien]