Package: sepp (4.3.10+dfsg-5)

[ Source: sepp  ]

phylogeny with ensembles of Hidden Markov Models

The tools SEPP and TIPP implementing these methods use ensembles of Hidden Markov Models (HMMs) in different ways, each focusing on a different problem.

SEPP stands for "SATe-enabled Phylogenetic Placement", and addresses the problem of phylogenetic placement of short reads into reference alignments and trees.

TIPP stands for "Taxonomic Identification and Phylogenetic Profiling", and addresses the problem of taxonomic identification and abundance profiling of metagenomic data.

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• dep: ncbi-blast+

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• dep: pplacer

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• dep: python3

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• dep: python3-dendropy

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Architecture	Package Size	Installed Size	Files
amd64	179.6 kB	551.0 kB	[list of files]