Package: megadepth (1.2.0-4)

[ Source: megadepth  ]

computes coverage from BigWig and BAM sequencing files

A major concern for the interpretation of DNA and RNA (!) sequencing is the number of reads that cover a particular area. This package has interesting statistics for the distinction of coding and non-coding parts of the genome and knows how to interpret transcripts that span multiple exons.

This package is a successor of the program 'bamcount'.

Other Packages Related to megadepth

• dep: libbigwig0 (>= 0.4.6+dfsg)

  C-bibliotek til at håndtere bigWig-filer

• dep: libc6 (>= 2.4)

  GNU C-bibliotek: Delte biblioteker
  also a virtual package provided by libc6-udeb

• dep: libgcc-s1 (>= 3.5)

  GCC støttebibliotek

• dep: libhts3 (>= 1.10)

  C-bibliotek for høj-gennemløb sekvensdataformater

• dep: libstdc++6 (>= 11)

  GNU Standard C++ bibliotek v3

• sug: r-bioc-megadepth

  BioCOnductor BigWig og BAM-relaterede redskaber

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Architecture	Package Size	Installed Size	Files
armel	68.7 kB	273.0 kB	[list of files]