Package: tiddit (3.5.2+dfsg-1)

[ Source: tiddit  ]

structural variant calling

TIDDIT is a tool to used to identify chromosomal rearrangements using Mate Pair or Paired End sequencing data. TIDDIT identifies intra and inter- chromosomal translocations, deletions, tandem-duplications and inversions, using supplementary alignments as well as discordant pairs.

TIDDIT has two analysis modules. The sv mode, which is used to search for structural variants. And the cov mode that analyse the read depth of a bam file and generates a coverage report.

Other Packages Related to tiddit

• dep: libc6 (>= 2.17) [arm64, ppc64el]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.4) [not arm64, ppc64el]

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.12)

  dep: python3 (>= 3.11~)

• dep: python3-joblib

  tools to provide lightweight pipelining in Python

• dep: python3-numpy

  Fast array facility to the Python 3 language

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

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Architecture	Package Size	Installed Size	Files
amd64	265.3 kB	1,151.0 kB	[list of files]
arm64	213.8 kB	1,187.0 kB	[list of files]
armel	222.8 kB	965.0 kB	[list of files]
armhf	225.4 kB	677.0 kB	[list of files]
i386	246.9 kB	1,069.0 kB	[list of files]
mips64el	199.6 kB	1,332.0 kB	[list of files]
mipsel	201.2 kB	1,242.0 kB	[list of files]
ppc64el	228.7 kB	1,315.0 kB	[list of files]