Package: mummer (3.23+dfsg-8)

[ Source: mummer  ]

Efficient sequence alignment of full genomes

MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. For example, MUMmer 3.0 can find all 20-basepair or longer exact matches between a pair of 5-megabase genomes in 13.7 seconds, using 78 MB of memory, on a 2.4 GHz Linux desktop computer. MUMmer can also align incomplete genomes; it handles the 100s or 1000s of contigs from a shotgun sequencing project with ease, and will align them to another set of contigs or a genome using the NUCmer program included with the system. If the species are too divergent for DNA sequence alignment to detect similarity, then the PROmer program can generate alignments based upon the six-frame translations of both input sequences.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c++, interface::commandline, Role: Program, Scope: Utility, Purpose: use::comparing, works-with-format::TODO, Supports Format: Plain Text, Works with: Need an extra tag

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• dep: gawk

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• dep: libc6 (>= 2.34)

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• dep: libgcc-s1 (>= 3.0) [not armel, armhf]

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  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

• dep: perl

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Architecture	Package Size	Installed Size	Files
amd64	646.2 kB	3,307.0 kB	[list of files]
arm64	621.2 kB	3,826.0 kB	[list of files]
armel	616.5 kB	3,745.0 kB	[list of files]
armhf	612.8 kB	3,361.0 kB	[list of files]
i386	653.4 kB	3,297.0 kB	[list of files]
mips64el	651.6 kB	4,009.0 kB	[list of files]
mipsel	648.8 kB	3,985.0 kB	[list of files]
ppc64el	655.8 kB	4,019.0 kB	[list of files]
s390x	622.6 kB	3,286.0 kB	[list of files]