Pakket: mummer (3.23+dfsg-8)

[ Bron: mummer  ]

Efficient sequence alignment of full genomes

MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. For example, MUMmer 3.0 can find all 20-basepair or longer exact matches between a pair of 5-megabase genomes in 13.7 seconds, using 78 MB of memory, on a 2.4 GHz Linux desktop computer. MUMmer can also align incomplete genomes; it handles the 100s or 1000s of contigs from a shotgun sequencing project with ease, and will align them to another set of contigs or a genome using the NUCmer program included with the system. If the species are too divergent for DNA sequence alignment to detect similarity, then the PROmer program can generate alignments based upon the six-frame translations of both input sequences.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c++, interface::commandline, Role: Program, Scope: Utility, Purpose: use::comparing, works-with-format::TODO, Supports Format: Plain Text, Works with: Need an extra tag

Andere aan mummer gerelateerde pakketten

• dep: gawk

  GNU awk, a pattern scanning and processing language

• dep: libc6 (>= 2.34)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgcc-s1 (>= 3.0) [niet armel, armhf]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

• dep: perl

  Larry Wall's Practical Extraction and Report Language

mummer downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	646,2 kB	3.307,0 kB	[overzicht]
arm64	621,2 kB	3.826,0 kB	[overzicht]
armel	616,5 kB	3.745,0 kB	[overzicht]
armhf	612,8 kB	3.361,0 kB	[overzicht]
i386	653,4 kB	3.297,0 kB	[overzicht]
mips64el	651,6 kB	4.009,0 kB	[overzicht]
mipsel	648,8 kB	3.985,0 kB	[overzicht]
ppc64el	655,8 kB	4.019,0 kB	[overzicht]
s390x	622,6 kB	3.286,0 kB	[overzicht]