Пакет: r-cran-alakazam (1.3.0-1 и други)

[ Източник: r-cran-alakazam  ]

Immunoglobulin Clonal Lineage and Diversity Analysis

Alakazam is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq) and provides a set of tools to investigate lymphocyte receptor clonal lineages, diversity, gene usage, and other repertoire level properties, with a focus on high-throughput immunoglobulin (Ig) sequencing.

Alakazam serves five main purposes:

 * Providing core functionality for other R packages in the Immcantation
   framework. This includes common tasks such as file I/O, basic DNA
   sequence manipulation, and interacting with V(D)J segment and gene
   annotations.
 * Providing an R interface for interacting with the output of the
   pRESTO and Change-O tool suites.
 * Performing lineage reconstruction on clonal populations of Ig
   sequences and analyzing the topology of the resultant lineage trees.
 * Performing clonal abundance and diversity analysis on lymphocyte
   repertoires.
 * Performing physicochemical property analyses of lymphocyte receptor
   sequences.

Други пакети, свързани с r-cran-alakazam

• dep: libc6 (>= 2.11) [mips64el, ppc64, s390x]

  GNU C Library: Shared libraries
  също и виртуален пакет, предлаган от libc6-udeb

  dep: libc6 (>= 2.14) [amd64]

  dep: libc6 (>= 2.16) [x32]

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.2) [hppa]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.37) [loong64, sh4]

  dep: libc6 (>= 2.4) [m68k, sparc64]

• dep: libc6.1 (>= 2.11) [alpha]

  GNU C Library: Shared libraries
  също и виртуален пакет, предлаган от libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [не alpha, hppa, ia64, m68k, riscv64, sh4, sparc64]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4, sparc64]

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libgcc2 (>= 4.2.1) [m68k]

  Пакетът не е наличен

• dep: libstdc++6 (>= 13.1) [не arm64, m68k, sparc64, x32]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 14) [arm64]

  dep: libstdc++6 (>= 5.2) [m68k, sparc64, x32]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: r-api-3.5 [m68k]

  Пакетът не е наличен

• dep: r-api-4.0 [не m68k]

  виртуален пакет, предлаган от r-base-core

• dep: r-base-core (>= 3.6.1-2) [m68k]

  GNU R core of statistical computation and graphics system

  dep: r-base-core (>= 4.0.2-1) [sparc64]

  dep: r-base-core (>= 4.2.1-2) [x32]

• dep: r-bioc-biostrings (>= 2.56.0) [не m68k, sparc64]

  GNU R string objects representing biological sequences

• dep: r-bioc-genomicalignments (>= 1.24.0) [не m68k, sparc64]

  BioConductor representation and manipulation of short genomic alignments

• dep: r-bioc-iranges (>= 2.22.2) [не m68k, sparc64]

  GNU R low-level containers for storing sets of integer ranges

• dep: r-cran-airr (>= 1.3) [x32]

  GNU R AIRR data representation reference library

  dep: r-cran-airr (>= 1.4.1) [не m68k, sparc64, x32]

• dep: r-cran-ape [не m68k]

  GNU R package for Analyses of Phylogenetics and Evolution

• dep: r-cran-dplyr (>= 0.8.3) [sparc64]

  GNU R grammar of data manipulation

  dep: r-cran-dplyr (>= 1.0) [не m68k, sparc64]

• dep: r-cran-ggplot2 (>= 3.2.0) [sparc64]

  implementation of the Grammar of Graphics

  dep: r-cran-ggplot2 (>= 3.3.4) [x32]

  dep: r-cran-ggplot2 (>= 3.4.0) [не m68k, sparc64, x32]

• dep: r-cran-igraph (>= 1.0) [x32]

  GNU R network analysis and visualization

  dep: r-cran-igraph (>= 1.0.0) [sparc64]

  dep: r-cran-igraph (>= 1.5.0) [не m68k, sparc64, x32]

• dep: r-cran-lazyeval [sparc64]

  GNU R lazy (non-standard) evaluation

• dep: r-cran-matrix [sparc64]

  GNU R package of classes for dense and sparse matrices

  dep: r-cran-matrix (>= 1.3-0) [не m68k, sparc64]

• dep: r-cran-progress [не m68k]

  GNU R terminal progress bars

• dep: r-cran-rcpp (>= 0.12.12) [не m68k]

  GNU R package for Seamless R and C++ Integration

• dep: r-cran-readr [не m68k]

  GNU R package to read rectangular text data

• dep: r-cran-rlang [не m68k]

  Functions for Base Types and Core R and 'Tidyverse' Features

• dep: r-cran-scales [не m68k]

  Scale functions for visualization

• dep: r-cran-seqinr [не m68k]

  GNU R biological sequences retrieval and analysis

• dep: r-cran-stringi [не m68k]

  GNU R character string processing facilities

• dep: r-cran-tibble [не m68k]

  GNU R Simple Data Frames

• dep: r-cran-tidyr (>= 1.0) [не m68k, sparc64]

  GNU R package to easily tidy data

  dep: r-cran-tidyr (>= 1.0.0) [sparc64]

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-testthat

  GNU R testsuite

Изтегляне на r-cran-alakazam

Изтегляне за всички налични архитектури

Архитектура	Версия	Големина на пакета	Големина след инсталиране	Файлове
alpha (неофициална архитектура)	1.3.0-1	2 357,8 кБ	2 916,0 кБ	[списък на файловете]
amd64	1.3.0-1	2 362,0 кБ	2 845,0 кБ	[списък на файловете]
arm64	1.3.0-1+b1	2 360,2 кБ	2 852,0 кБ	[списък на файловете]
hppa (неофициална архитектура)	1.3.0-1	2 360,1 кБ	2 849,0 кБ	[списък на файловете]
ia64 (неофициална архитектура)	1.3.0-1	2 368,7 кБ	2 948,0 кБ	[списък на файловете]
loong64 (неофициална архитектура)	1.3.0-1	2 357,6 кБ	2 836,0 кБ	[списък на файловете]
m68k (неофициална архитектура)	0.3.0-1	1 706,4 кБ	2 053,0 кБ	[списък на файловете]
mips64el	1.3.0-1	2 356,0 кБ	2 859,0 кБ	[списък на файловете]
ppc64 (неофициална архитектура)	1.3.0-1	2 362,4 кБ	2 918,0 кБ	[списък на файловете]
ppc64el	1.3.0-1	2 361,4 кБ	2 917,0 кБ	[списък на файловете]
riscv64	1.3.0-1+b1	2 364,5 кБ	2 821,0 кБ	[списък на файловете]
s390x	1.3.0-1	2 360,8 кБ	2 845,0 кБ	[списък на файловете]
sh4 (неофициална архитектура)	1.3.0-1	2 367,9 кБ	2 851,0 кБ	[списък на файловете]
sparc64 (неофициална архитектура)	1.0.2-1	1 855,4 кБ	2 252,0 кБ	[списък на файловете]
x32 (неофициална архитектура)	1.2.1-1	2 352,5 кБ	2 830,0 кБ	[списък на файловете]