Пакет: canu (2.2+dfsg-5)

[ Източник: canu  ]

single molecule sequence assembler for genomes

Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II or Oxford Nanopore MinION).

Canu is a hierarchical assembly pipeline which runs in four steps:

 * Detect overlaps in high-noise sequences using MHAP
 * Generate corrected sequence consensus
 * Trim corrected sequences
 * Assemble trimmed corrected sequences

Други пакети, свързани с canu

• dep: gnuplot-nox

  Command-line driven interactive plotting program. No-X package
  също и виртуален пакет, предлаган от gnuplot-qt, gnuplot-x11

  или gnuplot

  Command-line driven interactive plotting program.
  също и виртуален пакет, предлаган от gnuplot-nox, gnuplot-qt, gnuplot-x11

• dep: libc6 (>= 2.34)

  GNU C Library: Shared libraries
  също и виртуален пакет, предлаган от libc6-udeb

• dep: libfilesys-df-perl

  Module to obtain filesystem disk space information

• dep: libgcc-s1 (>= 4.2)

  GCC support library

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libsnappy1v5 (>= 1.1.10)

  fast compression/decompression library

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

• dep: mhap

  locality-sensitive hashing to detect long-read overlaps

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• sug: nanopolish

  consensus caller for nanopore sequencing data

Изтегляне на canu

Изтегляне за всички налични архитектури

Архитектура	Големина на пакета	Големина след инсталиране	Файлове
ppc64el	1 410,8 кБ	16 873,0 кБ	[списък на файловете]