[ 源代码： canu ]
软件包：canu（2.2+dfsg-5）
single molecule sequence assembler for genomes
Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II or Oxford Nanopore MinION).
Canu is a hierarchical assembly pipeline which runs in four steps:
* Detect overlaps in high-noise sequences using MHAP * Generate corrected sequence consensus * Trim corrected sequences * Assemble trimmed corrected sequences
其他与 canu 有关的软件包
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- dep: gnuplot-nox
- Command-line driven interactive plotting program. No-X package
同时作为一个虚包由这些包填实： gnuplot-qt, gnuplot-x11 - 或者 gnuplot
- Command-line driven interactive plotting program.
同时作为一个虚包由这些包填实： gnuplot-nox, gnuplot-qt, gnuplot-x11
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- dep: libc6 (>= 2.34)
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
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- dep: libfilesys-df-perl
- Module to obtain filesystem disk space information
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- dep: libgcc-s1 (>= 4.2)
- GCC 支持库
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- dep: libgomp1 (>= 6)
- GCC OpenMP（GOMP）支持库
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- dep: libsnappy1v5 (>= 1.1.10)
- fast compression/decompression library
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- dep: libstdc++6 (>= 11)
- GNU 标准 C++ 库，第3版
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- dep: mhap
- locality-sensitive hashing to detect long-read overlaps
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- dep: perl
- 拉里 沃尔的实用报表提取语言(Perl)
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- sug: nanopolish
- consensus caller for nanopore sequencing data