Пакет: r-bioc-variantannotation (1.24.2-1) [debports]

[ Източник:  ]

BioConductor annotation of genetic variants

This BioConductor package provides R functions to annotate variants, compute amino acid coding changess and to predict coding outcomes.

Други пакети, свързани с r-bioc-variantannotation

• dep: libc6 (>= 2.15)

  GNU C Library: Shared libraries
  също и виртуален пакет, предлаган от libc6-udeb

• dep: r-api-3.4

  Пакетът не е наличен

• dep: r-base-core (>= 3.4.3-1)

  GNU R core of statistical computation and graphics system

• dep: r-bioc-annotationdbi (>= 1.27.9)

  GNU R Annotation Database Interface for BioConductor

• dep: r-bioc-biobase

  base functions for Bioconductor

• dep: r-bioc-biocgenerics (>= 0.15.3)

  generic functions for Bioconductor

• dep: r-bioc-biostrings (>= 2.33.5)

  GNU R string objects representing biological sequences

• dep: r-bioc-bsgenome (>= 1.37.6)

  BioConductor infrastructure for Biostrings-based genome data packages

• dep: r-bioc-genomeinfodb (>= 1.11.4)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicfeatures (>= 1.27.4)

  GNU R tools for making and manipulating transcript centric annotations

• dep: r-bioc-genomicranges (>= 1.27.6)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 2.3.25)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-rsamtools (>= 1.23.10)

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• dep: r-bioc-rtracklayer (>= 1.25.16)

  GNU R interface to genome browsers and their annotation tracks

• dep: r-bioc-s4vectors (>= 0.13.13)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-summarizedexperiment (>= 1.5.3)

  BioConductor assay container

• dep: r-bioc-xvector (>= 0.5.6)

  BioConductor representation and manpulation of external sequences

• dep: r-cran-dbi

  GNU R package providing a generic database interface

• dep: zlib1g (>= 1:1.2.3.3)

  compression library - runtime

• sug: r-bioc-annotationhub

  GNU R client to access AnnotationHub resources

• sug: r-bioc-snpstats

  BioConductor SnpMatrix and XSnpMatrix classes and methods

• sug: r-cran-ggplot2

  implementation of the Grammar of Graphics

• sug: r-cran-runit

  GNU R package providing unit testing framework

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