Пакет: python3-unifrac (1.1.1-2) [debports]

[ Източник:  ]

high-performance phylogenetic diversity calculations

The de facto repository for high-performance phylogenetic diversity calculations. The methods in this repository are based on an implementation of the Strided State UniFrac algorithm which is faster, and uses less memory than Fast UniFrac. Strided State UniFrac supports Unweighted UniFrac, Weighted UniFrac, Generalized UniFrac, Variance Adjusted UniFrac and meta UniFrac. This repository also includes Stacked Faith (manuscript in preparation), a method for calculating Faith's PD that is faster and uses less memory than the Fast UniFrac-based reference implementation.

This package contains the Python3 module.

Други пакети, свързани с python3-unifrac

• dep: cython3

  C-Extensions for Python 3

• dep: libc6 (>= 2.4)

  GNU C Library: Shared libraries
  също и виртуален пакет, предлаган от libc6-udeb

• dep: libssu0 (>= 1.1.1)

  high-performance phylogenetic diversity calculations (lib)

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.12)

  dep: python3 (>= 3.10~)

• dep: python3-biom-format

  Biological Observation Matrix (BIOM) format (Python 3)

• dep: python3-h5py-serial

  general-purpose Python interface to hdf5 (Python 3 serial)

• dep: python3-iow

  balanced parentheses tree structure

• dep: python3-numpy

  Python library for numerical computations (Python 3)

• dep: python3-skbio

  Python3 data structures, algorithms, educational resources for bioinformatic

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