Пакет: mash (2.3+dfsg-6 и други) [debports]

[ Източник:  ]

fast genome and metagenome distance estimation using MinHash

Mash uses MinHash locality-sensitive hashing to reduce large biosequences to a representative sketch and rapidly estimate pairwise distances between genomes or metagenomes. Mash sketch databases effectively delineate known species boundaries, allow construction of approximate phylogenies, and can be searched in seconds using assembled genomes or raw sequencing runs from Illumina, Pacific Biosciences, and Oxford Nanopore. For metagenomics, Mash scales to thousands of samples and can replicate Human Microbiome Project and Global Ocean Survey results in a fraction of the time.

Други пакети, свързани с mash

• dep: libc6.1 (>= 2.34)

  GNU C Library: Shared libraries
  също и виртуален пакет, предлаган от libc6.1-udeb

• dep: libcapnp-1.0.1

  Cap'n Proto C++ library

• dep: libgcc-s1 (>= 3.4)

  GCC support library

• dep: libgsl28 (>= 2.8+dfsg)

  GNU Scientific Library (GSL) -- library package

• dep: libmurmurhash2 (>= 0.2)

  Portable MurmurHash Implementation

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

Изтегляне на mash

Изтегляне за всички налични архитектури

Архитектура	Версия	Големина на пакета	Големина след инсталиране	Файлове
alpha (неофициална архитектура)	2.3+dfsg-6+b1	176,8 кБ	620,0 кБ	[списък на файловете]