Пакет: r-bioc-annotationhub (3.14.0+dfsg-1)

[ Източник: r-bioc-annotationhub  ]

Експериментален пакет

Предупреждение: Този пакет е от дистрибуцията experimental. Това означава, че е възможно да е нестабилен или да има грешки, а може дори и да предизвика загуба на данни. Прочетете информация за промените и останалата документация преди да го използвате.

GNU R client to access AnnotationHub resources

This package provides a client for the Bioconductor AnnotationHub web resource. The AnnotationHub web resource provides a central location where genomic files (e.g., VCF, bed, wig) and other resources from standard locations (e.g., UCSC, Ensembl) can be discovered. The resource includes metadata about each resource, e.g., a textual description, tags, and date of modification. The client creates and manages a local cache of files retrieved by the user, helping with quick and reproducible access.

Други пакети, свързани с r-bioc-annotationhub

• dep: r-api-4.0

  Пакетът не е наличен

• dep: r-api-bioc-3.20

  виртуален пакет, предлаган от r-bioc-biocgenerics

• dep: r-bioc-annotationdbi (>= 1.31.19)

  GNU R Annotation Database Interface for BioConductor

• dep: r-bioc-biocfilecache (>= 1.5.1)

  GNU R management of files across sessions

• dep: r-bioc-biocgenerics (>= 0.15.10)

  generic functions for Bioconductor

• dep: r-bioc-biocversion

  set the appropriate version of Bioconductor packages

• dep: r-bioc-s4vectors

  BioConductor S4 implementation of vectors and lists

• dep: r-cran-biocmanager

  access the Bioconductor project package repository

• dep: r-cran-curl

  GNU R modern and flexible web client for R

• dep: r-cran-dplyr

  GNU R grammar of data manipulation

• dep: r-cran-httr

  GNU R tools for working with URLs and HTTP

• dep: r-cran-rappdirs

  GNU R application directories

• dep: r-cran-rsqlite

  Database Interface R driver for SQLite

• dep: r-cran-yaml

  Methods to convert R data to YAML and back

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-biostrings

  GNU R string objects representing biological sequences

• sug: r-bioc-ensembldb

  GNU R utilities to create and use an Ensembl based annotation database

• sug: r-bioc-experimenthub

  BioConductor client to access ExperimentHub resources

• sug: r-bioc-genomeinfodb

  BioConductor utilities for manipulating chromosome identifiers

• sug: r-bioc-genomicranges

  BioConductor representation and manipulation of genomic intervals

• sug: r-bioc-iranges

  GNU R low-level containers for storing sets of integer ranges

• sug: r-bioc-rsamtools

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• sug: r-bioc-rtracklayer

  GNU R interface to genome browsers and their annotation tracks

• sug: r-bioc-summarizedexperiment

  BioConductor assay container

• sug: r-bioc-txdbmaker

  Tools for making TxDb objects from genomic annotations

• sug: r-bioc-variantannotation

  BioConductor annotation of genetic variants

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-runit

  GNU R package providing unit testing framework

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Архитектура	Големина на пакета	Големина след инсталиране	Файлове
all	436,0 кБ	726,0 кБ	[списък на файловете]