Пакет: r-cran-alakazam (1.3.0-2~0exp0)
Връзки за r-cran-alakazam
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Изтегляне на пакет-източник r-cran-alakazam.
- [r-cran-alakazam_1.3.0-2~0exp0.dsc]
- [r-cran-alakazam_1.3.0.orig.tar.gz]
- [r-cran-alakazam_1.3.0-2~0exp0.debian.tar.xz]
Отговорници:
Външни препратки:
- Начална страница [cran.r-project.org]
Подобни пакети:
Експериментален пакет
Предупреждение: Този пакет е от дистрибуцията experimental. Това означава, че е възможно да е нестабилен или да има грешки, а може дори и да предизвика загуба на данни. Прочетете информация за промените и останалата документация преди да го използвате.
Immunoglobulin Clonal Lineage and Diversity Analysis
Alakazam is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq) and provides a set of tools to investigate lymphocyte receptor clonal lineages, diversity, gene usage, and other repertoire level properties, with a focus on high-throughput immunoglobulin (Ig) sequencing.
Alakazam serves five main purposes:
* Providing core functionality for other R packages in the Immcantation framework. This includes common tasks such as file I/O, basic DNA sequence manipulation, and interacting with V(D)J segment and gene annotations. * Providing an R interface for interacting with the output of the pRESTO and Change-O tool suites. * Performing lineage reconstruction on clonal populations of Ig sequences and analyzing the topology of the resultant lineage trees. * Performing clonal abundance and diversity analysis on lymphocyte repertoires. * Performing physicochemical property analyses of lymphocyte receptor sequences.
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- dep: libc6 (>= 2.11)
- GNU C Library: Shared libraries
също и виртуален пакет, предлаган от libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
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- dep: libstdc++6 (>= 13.1)
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- dep: r-bioc-biostrings (>= 2.72.1)
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- dep: r-bioc-genomicalignments (>= 1.40.0)
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- dep: r-bioc-iranges (>= 2.38.1)
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- dep: r-cran-airr (>= 1.4.1)
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- dep: r-cran-dplyr (>= 1.0)
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- sug: r-cran-knitr
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- sug: r-cran-rmarkdown
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- sug: r-cran-testthat
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Изтегляне на r-cran-alakazam
Архитектура | Големина на пакета | Големина след инсталиране | Файлове |
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mips64el | 2 358,1 кБ | 2 921,0 кБ | [списък на файловете] |