[ 原始碼： r-cran-alakazam ]
套件：r-cran-alakazam（1.3.0-2~0exp0）
r-cran-alakazam 的相關連結
Debian 的資源：
下載原始碼套件 r-cran-alakazam：
- [r-cran-alakazam_1.3.0-2~0exp0.dsc]
- [r-cran-alakazam_1.3.0.orig.tar.gz]
- [r-cran-alakazam_1.3.0-2~0exp0.debian.tar.xz]
維護小組：
外部的資源：
- 主頁 [cran.r-project.org]
相似套件：
試製（Experimental）套件
警告：這個套件來自於 experimental 發行版。這表示它很有可能表現出不穩定或者出現 bug ，甚至是導致資料損失。請務必在使用之前查閱 changelog 以及其他潛在的文件。
Immunoglobulin Clonal Lineage and Diversity Analysis
Alakazam is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq) and provides a set of tools to investigate lymphocyte receptor clonal lineages, diversity, gene usage, and other repertoire level properties, with a focus on high-throughput immunoglobulin (Ig) sequencing.
Alakazam serves five main purposes:
* Providing core functionality for other R packages in the Immcantation framework. This includes common tasks such as file I/O, basic DNA sequence manipulation, and interacting with V(D)J segment and gene annotations. * Providing an R interface for interacting with the output of the pRESTO and Change-O tool suites. * Performing lineage reconstruction on clonal populations of Ig sequences and analyzing the topology of the resultant lineage trees. * Performing clonal abundance and diversity analysis on lymphocyte repertoires. * Performing physicochemical property analyses of lymphocyte receptor sequences.
其他與 r-cran-alakazam 有關的套件
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- dep: libc6 (>= 2.11)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC 支援函式庫
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- dep: libstdc++6 (>= 13.1)
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- dep: r-api-4.0
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- dep: r-bioc-biostrings (>= 2.72.1)
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- dep: r-bioc-genomicalignments (>= 1.40.0)
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- dep: r-bioc-iranges (>= 2.38.1)
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- dep: r-cran-airr (>= 1.4.1)
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- dep: r-cran-dplyr (>= 1.0)
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- dep: r-cran-ggplot2 (>= 3.4.0)
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- dep: r-cran-igraph (>= 1.5.0)
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- dep: r-cran-rcpp (>= 0.12.12)
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- dep: r-cran-readr
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- sug: r-cran-rmarkdown
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