Пакет: pbalign (0.3.2-1)

[ Източник: pbalign  ]

map Pacific Biosciences reads to reference DNA sequences

pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) format.

This package is part of the SMRTAnalysis suite.

Други пакети, свързани с pbalign

• dep: blasr (>= 5.3+0)

  mapping single-molecule sequencing reads

• dep: python

  interactive high-level object-oriented language (Python2 version)

• dep: python-pbalign (= 0.3.2-1)

  map Pacific Biosciences reads to reference DNA sequences (Python2)

• dep: python-pkg-resources

  Package Discovery and Resource Access using pkg_resources

• rec: hdf5-tools

  Hierarchical Data Format 5 (HDF5) - Runtime tools

• rec: python-pbh5tools

  tools for manipulating Pacific Biosciences HDF5 files -- Python 2 library

• sug: bowtie2

  ultrafast memory-efficient short read aligner

• sug: gmap

  spliced and SNP-tolerant alignment for mRNA and short reads

• sug: pbalign-doc

  documentation for pbalign

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Архитектура	Големина на пакета	Големина след инсталиране	Файлове
all	9,3 кБ	44,0 кБ	[списък на файловете]