Пакет: stringtie (2.1.4+ds-4)

[ Източник: stringtie  ]

assemble short RNAseq reads to transcripts

The abundance of transcripts in a human tissue sample can be determined by RNA sequencing. The exact sequence sampled may be random, depending on the technology used. And it may be short, i.e. shorter than the transcript. At some point, many shorter reads need to be assembled to the model the complete transcripts.

StringTie knows how to assemble of RNA-Seq into potential transcripts without the need of a reference genome and provides a quantification also of the splice variants.

Други пакети, свързани с stringtie

• dep: libc6 (>= 2.14)

  GNU C Library: Shared libraries
  също и виртуален пакет, предлаган от libc6-udeb

• dep: libgcc-s1 (>= 3.4)

  GCC support library

• dep: libhts3 (>= 1.10)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 4.1.1)

  GNU Standard C++ Library v3

• dep: zlib1g (>= 1:1.2.3.3)

  compression library - runtime

• rec: stringtie-examples

  Пакетът не е наличен

• sug: cufflinks

  Transcript assembly, differential expression and regulation for RNA-Seq

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Архитектура	Големина на пакета	Големина след инсталиране	Файлове
amd64	397,0 кБ	1 018,0 кБ	[списък на файловете]