Paket: stringtie (2.1.4+ds-4)

[ Källkod: stringtie  ]

assemble short RNAseq reads to transcripts

The abundance of transcripts in a human tissue sample can be determined by RNA sequencing. The exact sequence sampled may be random, depending on the technology used. And it may be short, i.e. shorter than the transcript. At some point, many shorter reads need to be assembled to the model the complete transcripts.

StringTie knows how to assemble of RNA-Seq into potential transcripts without the need of a reference genome and provides a quantification also of the splice variants.

Andra paket besläktade med stringtie

• dep: libc6 (>= 2.14)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

• dep: libgcc-s1 (>= 3.4)

  GCC stödbibliotek

• dep: libhts3 (>= 1.10)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 4.1.1)

  GNU standardbibliotek v3 för C++

• dep: zlib1g (>= 1:1.2.3.3)

  Kompressionsbibliotek - körtidspaket

• rec: stringtie-examples

  Paketet inte tillgängligt

• sug: cufflinks

  Transcript assembly, differential expression and regulation for RNA-Seq

Hämta stringtie

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Paketstorlek	Installerad storlek	Filer
amd64	397,0 kbyte	1.018,0 kbyte	[filförteckning]