[ 原始碼： stacks ]
套件：stacks（2.68+dfsg-1）
pipeline for building loci from short-read DNA sequences
Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.
Note that this package installs Stacks such that all commands must be run as: $ stacks <cmdname> <args>
其他與 stacks 有關的套件
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- dep: bsdextrautils
- extra utilities from 4.4BSD-Lite
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- dep: libc6 (>= 2.38)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: libdbi-perl
- Perl Database Interface (DBI)
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- dep: libgcc-s1 (>= 3.0)
- GCC 支援函式庫
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- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
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- dep: libhts3t64 (>= 1.17)
- C library for high-throughput sequencing data formats
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- dep: libstdc++6 (>= 14)
- GNU Standard C++ Library v3
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- dep: zlib1g (>= 1:1.2.6)
- 壓縮函式庫 - 跑程式時用(runtime)
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- rec: libspreadsheet-writeexcel-perl
- module to create Excel spreadsheets
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- rec: littler
- GNU R scripting and command-line front-end -- transition package
同時作為一個虛擬套件由這些套件填實： r-cran-littler
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- sug: gdb
- GNU Debugger