[ trixie ]
[ sid ]
[ 原始碼： bifrost ]
套件：libbifrost-dev（1.3.1-1）
static library and header files for libbifrost
Libbifrost-dev is the development library for the command-line tool bifrost for sequencing that features a broad range of functions, such as indexing, editing, and querying the graph, and includes a graph coloring method that maps each k-mer of the graph to the genomes it occurs in.
* Build, index, color and query the compacted de Bruijn graph * No need to build the uncompacted de Bruijn graph * Reads or assembled genomes as input * Output graph in GFA (can be visualized with Bandage), FASTA or binary * Graph cleaning: short tip clipping, etc. * Multi-threaded * No parameters to estimate with other tools * Exact or approximate k-mer search of queries
其他與 libbifrost-dev 有關的套件
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- dep: libbifrost0 (= 1.3.1-1)
- library for parallel construction, indexing and querying of de Bruijn graphs