Paket: libbifrost-dev (1.3.1-1)

[ Quellcode: bifrost  ]

static library and header files for libbifrost

Libbifrost-dev is the development library for the command-line tool bifrost for sequencing that features a broad range of functions, such as indexing, editing, and querying the graph, and includes a graph coloring method that maps each k-mer of the graph to the genomes it occurs in.

 * Build, index, color and query the compacted de Bruijn graph
 * No need to build the uncompacted de Bruijn graph
 * Reads or assembled genomes as input
 * Output graph in GFA (can be visualized with Bandage), FASTA or binary
 * Graph cleaning: short tip clipping, etc.
 * Multi-threaded
 * No parameters to estimate with other tools
 * Exact or approximate k-mer search of queries

Andere Pakete mit Bezug zu libbifrost-dev

• dep: libbifrost0 (= 1.3.1-1)

  library for parallel construction, indexing and querying of de Bruijn graphs

libbifrost-dev herunterladen

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Architektur	Paketgröße	Größe (installiert)	Dateien
s390x	610,5 kB	4.019,0 kB	[Liste der Dateien]