套件：mafft（7.505-1 以及其他的）

[ 原始碼： mafft  ]

Multiple alignment program for amino acid or nucleotide sequences

MAFFT is a multiple sequence alignment program which offers three accuracy-oriented methods:

 * L-INS-i (probably most accurate; recommended for <200 sequences;
   iterative refinement method incorporating local pairwise alignment
   information),
 * G-INS-i (suitable for sequences of similar lengths; recommended for
   <200 sequences; iterative refinement method incorporating global
   pairwise alignment information),
 * E-INS-i (suitable for sequences containing large unalignable regions;
   recommended for <200 sequences),

and five speed-oriented methods:

 * FFT-NS-i (iterative refinement method; two cycles only),
 * FFT-NS-i (iterative refinement method; max. 1000 iterations),
 * FFT-NS-2 (fast; progressive method),
 * FFT-NS-1 (very fast; recommended for >2000 sequences; progressive
   method with a rough guide tree),
 * NW-NS-PartTree-1 (recommended for ∼50,000 sequences; progressive
   method with the PartTree algorithm).

標籤: 生物學: Clustal/ALN, 蛋白質, 領域: field::biology, field::biology:bioinformatics, 實做語言: implemented-in::c, interface::commandline, 角色: 程式, 範圍: 實用程式, Purpose: use::comparing, works-with-format::plaintext, 處理: Biological Sequence

其他與 mafft 有關的套件

• dep: libc6 (>= 2.29) [除 arm64, riscv64]

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

  dep: libc6 (>= 2.34) [arm64, riscv64]

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• rec: blast2

  套件暫時不可用

• rec: libwww-perl

  simple and consistent interface to the world-wide web

• rec: lynx

  classic non-graphical (text-mode) web browser

• rec: ruby

  Interpreter of object-oriented scripting language Ruby (default version)

• enh: t-coffee

  Multiple Sequence Alignment

下載 mafft

下載可用於所有硬體架構的

硬體架構	版本	套件大小	安裝後大小	檔案
amd64	7.505-1	1，052。5 kB	11，920。0 kB	[檔案列表]
arm64	7.505-1+b1	937。9 kB	12，408。0 kB	[檔案列表]
armel	7.505-1	916。0 kB	12，403。0 kB	[檔案列表]
armhf	7.505-1	765。3 kB	9，139。0 kB	[檔案列表]
i386	7.505-1	983。3 kB	13，119。0 kB	[檔案列表]
mips64el	7.505-1	873。9 kB	14，427。0 kB	[檔案列表]
ppc64el	7.505-1	1，019。2 kB	16，336。0 kB	[檔案列表]
riscv64	7.505-1+b1	1，085。5 kB	9，760。0 kB	[檔案列表]
s390x	7.505-1	891。0 kB	13，010。0 kB	[檔案列表]