软件包：mafft（7.505-1 以及其他的）

[ 源代码： mafft  ]

Multiple alignment program for amino acid or nucleotide sequences

MAFFT is a multiple sequence alignment program which offers three accuracy-oriented methods:

 * L-INS-i (probably most accurate; recommended for <200 sequences;
   iterative refinement method incorporating local pairwise alignment
   information),
 * G-INS-i (suitable for sequences of similar lengths; recommended for
   <200 sequences; iterative refinement method incorporating global
   pairwise alignment information),
 * E-INS-i (suitable for sequences containing large unalignable regions;
   recommended for <200 sequences),

and five speed-oriented methods:

 * FFT-NS-i (iterative refinement method; two cycles only),
 * FFT-NS-i (iterative refinement method; max. 1000 iterations),
 * FFT-NS-2 (fast; progressive method),
 * FFT-NS-1 (very fast; recommended for >2000 sequences; progressive
   method with a rough guide tree),
 * NW-NS-PartTree-1 (recommended for ∼50,000 sequences; progressive
   method with the PartTree algorithm).

标签: 生物学: Clustal/ALN, 蛋白质, 领域: field::biology, field::biology:bioinformatics, 实做语言: implemented-in::c, interface::commandline, 角色: 程序, 范围: 实用程序, Purpose: use::comparing, works-with-format::plaintext, 处理: Biological Sequence

其他与 mafft 有关的软件包

• dep: libc6 (>= 2.29) [除 arm64, riscv64]

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

  dep: libc6 (>= 2.34) [arm64, riscv64]

• dep: perl

  拉里 沃尔的实用报表提取语言(Perl)

• rec: blast2

  软件包暂时不可用

• rec: libwww-perl

  simple and consistent interface to the world-wide web

• rec: lynx

  classic non-graphical (text-mode) web browser

• rec: ruby

  Interpreter of object-oriented scripting language Ruby (default version)

• enh: t-coffee

  Multiple Sequence Alignment

下载 mafft

下载可用于所有硬件架构的

硬件架构	版本	软件包大小	安装后大小	文件
amd64	7.505-1	1,052.5 kB	11,920.0 kB	[文件列表]
arm64	7.505-1+b1	937.9 kB	12,408.0 kB	[文件列表]
armel	7.505-1	916.0 kB	12,403.0 kB	[文件列表]
armhf	7.505-1	765.3 kB	9,139.0 kB	[文件列表]
i386	7.505-1	983.3 kB	13,119.0 kB	[文件列表]
mips64el	7.505-1	873.9 kB	14,427.0 kB	[文件列表]
ppc64el	7.505-1	1,019.2 kB	16,336.0 kB	[文件列表]
riscv64	7.505-1+b1	1,085.5 kB	9,760.0 kB	[文件列表]
s390x	7.505-1	891.0 kB	13,010.0 kB	[文件列表]