[ 原始碼： qcumber ]
套件：qcumber（2.3.0-2）
quality control of genomic sequences
QCPipeline is a tool for quality control. The workflow is as follows:
1. Quality control with FastQC 2. Trim Reads with Trimmomatic 3. Quality control of trimmed reads with FastQC 4. Map reads against reference using bowtie2 5. Classify reads with Kraken
其他與 qcumber 有關的套件
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- dep: debconf (>= 0.5)
- Debian 設定管理系統
- 或者 debconf-2.0
- 本虛擬套件由這些套件填實： cdebconf, cdebconf-udeb, debconf
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- dep: libjs-angularjs
- lets you write client-side web applications as if you had a smarter browser
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- dep: libjs-bootstrap
- HTML, CSS and JS framework
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- dep: libjs-d3
- JavaScript visualization library for HTML and SVG
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- dep: libjs-jquery
- JavaScript library for dynamic web applications
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-biopython
- Python3 library for bioinformatics
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- dep: python3-jinja2
- small but fast and easy to use stand-alone template engine
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- dep: python3-matplotlib
- Python based plotting system in a style similar to Matlab
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- dep: r-base-core
- GNU R core of statistical computation and graphics system
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- dep: r-bioc-savr
- GNU R parse and analyze Illumina SAV files
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- dep: r-cran-ggplot2
- implementation of the Grammar of Graphics
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- dep: r-cran-quantreg
- GNU R package for quantile regression
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- dep: snakemake
- pythonic workflow management system