套件：sga（0.10.14-2） [debports]
de novo genome assembler that uses string graphs
The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads.
SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.
其他與 sga 有關的套件
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- dep: libbamtools2.4.0
- 套件暫時不可用
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- dep: libc6 (>= 2.23)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: libgcc1 (>= 1:3.4)
- 套件暫時不可用
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- dep: libgomp1 (>= 4.9)
- GCC OpenMP (GOMP) support library
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
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- dep: python
- 套件暫時不可用
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- dep: python-pysam
- 套件暫時不可用
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- dep: python-ruffus
- 套件暫時不可用
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- dep: zlib1g (>= 1:1.1.4)
- 壓縮函式庫 - 跑程式時用(runtime)
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- sug: abyss (>= 1.5.2-2)
- de novo, parallel, sequence assembler for short reads