[ 原始碼： svim ]
套件：svim（2.0.0-3）
Structural variant caller for long sequencing reads
SVIM is a structural variant caller for long sequencing reads. It is able to detect, classify and genotype five different classes of structural variants. Unlike existing methods, SVIM integrates information from across the genome to precisely distinguish similar events, such as tandem and interspersed duplications and simple insertions.
其他與 svim 有關的套件
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-cpuinfo
- Python module for getting CPU info (Python 3)
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- dep: python3-edlib
- library for sequence alignment using edit distance (Python3 module)
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- dep: python3-matplotlib
- Python based plotting system in a style similar to Matlab
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- dep: python3-numpy
- Fast array facility to the Python language (Python 3)
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- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: python3-pyspoa
- Python bindings to spoa
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- dep: python3-scipy
- scientific tools for Python 3