套件：r-bioc-shortread（1.62.0-1） [debports]
GNU R classes and methods for high-throughput short-read sequencing data
This BioConductor module is a package for input, quality assessment, manipulation and output of high-throughput sequencing data. ShortRead is provided in the R and Bioconductor environments, allowing ready access to additional facilities for advanced statistical analysis, data transformation, visualization and integration with diverse genomic resources.
其他與 r-bioc-shortread 有關的套件
|
|
|
|
-
- dep: libc6 (>= 2.7)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
-
- dep: libgcc-s1 (>= 3.0)
- GCC 支援函式庫
-
- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
-
- dep: r-api-4.0
- 本虛擬套件由這些套件填實： r-base-core
-
- dep: r-api-bioc-3.19
- 本虛擬套件由這些套件填實： r-bioc-biocgenerics
-
- dep: r-bioc-biobase (>= 2.64.0)
- base functions for Bioconductor
-
- dep: r-bioc-biocgenerics (>= 0.50.0)
- generic functions for Bioconductor
-
- dep: r-bioc-biocparallel (>= 1.38.0)
- BioConductor facilities for parallel evaluation
-
- dep: r-bioc-biostrings (>= 2.72.1)
- GNU R string objects representing biological sequences
-
- dep: r-bioc-genomeinfodb (>= 1.40.1)
- BioConductor utilities for manipulating chromosome identifiers
-
- dep: r-bioc-genomicalignments (>= 1.40.0)
- BioConductor representation and manipulation of short genomic alignments
-
- dep: r-bioc-genomicranges (>= 1.56.1)
- BioConductor representation and manipulation of genomic intervals
-
- dep: r-bioc-iranges (>= 2.38.1)
- GNU R low-level containers for storing sets of integer ranges
-
- dep: r-bioc-pwalign (>= 1.0.0-2~0exp1)
- Perform pairwise sequence alignments
-
- dep: r-bioc-rhtslib (>= 3.0.0)
- HTSlib high-throughput sequencing library as GNU R package
-
- dep: r-bioc-rsamtools (>= 2.20.0)
- GNU R binary alignment (BAM), variant call (BCF), or tabix file import
-
- dep: r-bioc-s4vectors (>= 0.42.1)
- BioConductor S4 implementation of vectors and lists
-
- dep: r-bioc-xvector (>= 0.44.0)
- BioConductor representation and manpulation of external sequences
-
- dep: r-bioc-zlibbioc (>= 1.50.0)
- (Virtual) zlibbioc Bioconductor package
-
- dep: r-cran-hwriter
- HTML Writer - Outputs R objects in HTML format
-
- dep: r-cran-lattice
- GNU R package for 'Trellis' graphics
-
- dep: r-cran-latticeextra
- GNU R package of additional graphical displays based on lattice
-
- dep: zlib1g (>= 1:1.1.4)
- 壓縮函式庫 - 跑程式時用(runtime)
-
- sug: r-bioc-biocstyle (>= 2.32.1)
- standard styles for vignettes and other Bioconductor documents
-
- sug: r-bioc-biomart (>= 2.60.1)
- GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
-
- sug: r-bioc-genomicfeatures (>= 1.56.0)
- GNU R tools for making and manipulating transcript centric annotations
-
- sug: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
-
- sug: r-cran-runit
- GNU R package providing unit testing framework