套件：indelible（1.03-6 以及其他的）
powerful and flexible simulator of biological evolution
INDELible is a new, portable, and flexible application for biological sequence simulation that combines many features in the same place for the first time. Using a length-dependent model of indel formation it can simulate evolution of multi-partitioned nucleotide, amino-acid, or codon data sets through the processes of insertion, deletion, and substitution in continuous time.
Nucleotide simulations may use the general unrestricted model or the general time reversible model and its derivatives, and amino-acid simulations can be conducted using fifteen different empirical rate matrices. Substitution rate heterogeneity can be modeled via the continuous and discrete gamma distributions, with or without a proportion of invariant sites. INDELible can also simulate under non-homogeneous and non-stationary conditions where evolutionary models are permitted to change across a phylogeny.
Unique among indel simulation programs, INDELible offers the ability to simulate using codon models that exhibit nonsynonymous/synonymous rate ratio heterogeneity among sites and/or lineages.
其他與 indelible 有關的套件
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- dep: libc6 (>= 2.34) [除 alpha, arm64, ia64, sh4]
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
- dep: libc6 (>= 2.37) [sh4]
- dep: libc6 (>= 2.38) [arm64]
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- dep: libc6.1 (>= 2.34) [alpha]
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6.1-udeb
- dep: libc6.1 (>= 2.37) [ia64]
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- dep: libgcc-s1 (>= 3.0) [除 armel, armhf, hppa, ia64, m68k, sh4]
- GCC 支援函式庫
- dep: libgcc-s1 (>= 3.3.4) [sh4]
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
- dep: libgcc-s1 (>= 4.2) [ia64]
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- dep: libgcc-s2 (>= 4.2.1) [m68k]
- GCC 支援函式庫
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- dep: libgcc-s4 (>= 4.1.1) [hppa]
- GCC 支援函式庫
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- dep: libstdc++6 (>= 13.1)
- GNU Standard C++ Library v3
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- dep: libunwind8 [ia64]
- library to determine the call-chain of a program - runtime
下載 indelible
| 硬體架構 | 版本 | 套件大小 | 安裝後大小 | 檔案 |
|---|---|---|---|---|
| alpha （非官方移植版） | 1.03-6 | 374。6 kB | 1，440。0 kB | [檔案列表] |
| amd64 | 1.03-6 | 383。2 kB | 1，375。0 kB | [檔案列表] |
| arm64 | 1.03-6+b1 | 359。4 kB | 1，312。0 kB | [檔案列表] |
| armel | 1.03-6 | 386。8 kB | 1，338。0 kB | [檔案列表] |
| armhf | 1.03-6 | 374。3 kB | 1，130。0 kB | [檔案列表] |
| hppa （非官方移植版） | 1.03-6 | 379。9 kB | 1，360。0 kB | [檔案列表] |
| i386 | 1.03-6 | 400。4 kB | 1，422。0 kB | [檔案列表] |
| ia64 （非官方移植版） | 1.03-6 | 455。4 kB | 2，083。0 kB | [檔案列表] |
| m68k （非官方移植版） | 1.03-6 | 377。1 kB | 1，358。0 kB | [檔案列表] |
| mips64el | 1.03-6 | 361。2 kB | 1，388。0 kB | [檔案列表] |
| ppc64 （非官方移植版） | 1.03-6 | 382。5 kB | 1，375。0 kB | [檔案列表] |
| ppc64el | 1.03-6 | 388。1 kB | 1，375。0 kB | [檔案列表] |
| riscv64 | 1.03-6 | 389。7 kB | 1，191。0 kB | [檔案列表] |
| s390x | 1.03-6 | 385。9 kB | 1，327。0 kB | [檔案列表] |
| sh4 （非官方移植版） | 1.03-6 | 452。8 kB | 1，374。0 kB | [檔案列表] |
| sparc64 （非官方移植版） | 1.03-6 | 360。7 kB | 1，634。0 kB | [檔案列表] |
| x32 （非官方移植版） | 1.03-6 | 381。4 kB | 1，338。0 kB | [檔案列表] |