套件：libjellyfish-perl（2.3.1-2 以及其他的） [debports]
count k-mers in DNA sequences (Perl bindings of jellyfish)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.
This package contains the Perl bindings of jellyfish.
其他與 libjellyfish-perl 有關的套件
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- dep: libc6 (>= 2.34)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: libgcc-s4 (>= 4.1.1)
- GCC 支援函式庫
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- dep: perl (>= 5.38.2-2)
- Larry Wall's Practical Extraction and Report Language
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- dep: perlapi-5.38.2
- 本虛擬套件由這些套件填實： perl-base