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[ 原始碼： snippy ]
套件：snippy-examples（4.6.0+dfsg-5）
rapid haploid variant calling and core genome alignment (examples)
Snippy finds SNPs between a haploid reference genome and your NGS sequence reads. It will find both substitutions (snps) and insertions/deletions (indels). It will use as many CPUs as you can give it on a single computer (tested to 64 cores). It is designed with speed in mind, and produces a consistent set of output files in a single folder. It can then take a set of Snippy results using the same reference and generate a core SNP alignment (and ultimately a phylogenomic tree).
This package contains example data to test snippy.
其他與 snippy-examples 有關的套件
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- rec: snippy
- rapid haploid variant calling and core genome alignment