套件：libgenomicsdb1（1.5.3-3 以及其他的） [debports]

[ 原始碼：  ]

sparse array storage library for genomics (shared libraries)

GenomicsDB is built on top of a htslib fork and an internal array storage system for importing, querying and transforming variant data. Variant data is sparse by nature (sparse relative to the whole genome) and using sparse array data stores is a perfect fit for storing such data.

The GenomicsDB stores variant data in a 2D array where:

 - Each column corresponds to a genomic position (chromosome + position);
 - Each row corresponds to a sample in a VCF (or CallSet in the GA4GH
   terminology);
 - Each cell contains data for a given sample/CallSet at a given position;
   data is stored in the form of cell attributes;
 - Cells are stored in column major order - this makes accessing cells with
   the same column index (i.e. data for a given genomic position over all
   samples) fast.
 - Variant interval/gVCF interval data is stored in a cell at the start of the
   interval. The END is stored as a cell attribute. For variant intervals
   (such as deletions and gVCF REF blocks), an additional cell is stored at
   the END value of the variant interval. When queried for a given genomic
   position, the query library performs an efficient sweep to determine all
   intervals that intersect with the queried position.

This package contains the shared library.

其他與 libgenomicsdb1 有關的套件

• dep: libbz2-1.0

  high-quality block-sorting file compressor library - runtime

• dep: libc6.1 (>= 2.38)

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6.1-udeb

• dep: libcurl4t64 (>= 7.18.0)

  easy-to-use client-side URL transfer library (OpenSSL flavour)

• dep: libfmt9 (>= 9.1.0+ds1)

  fast type-safe C++ formatting library -- library

• dep: libgcc-s1 (>= 3.4)

  GCC 支援函式庫

• dep: libgomp1 (>= 4.9)

  GCC OpenMP (GOMP) support library

• dep: liblzma5 (>= 5.1.1alpha+20120614)

  XZ-format compression library

• dep: libmuparserx4.0.12 (>= 4.0.12)

  mathematical expression parser library

• dep: libprotobuf23 (>= 3.12.4)

  protocol buffers C++ library

• dep: libssl3t64 (>= 3.0.0)

  Secure Sockets Layer toolkit - shared libraries

• dep: libstdc++6 (>= 14)

  GNU Standard C++ Library v3

• dep: libuuid1 (>= 2.16)

  Universally Unique ID library

• dep: openmpi-bin

  high performance message passing library -- binaries

• dep: zlib1g (>= 1:1.1.4)

  壓縮函式庫 - 跑程式時用(runtime)

下載 libgenomicsdb1

下載可用於所有硬體架構的

硬體架構	版本	套件大小	安裝後大小	檔案
alpha （非官方移植版）	1.5.3-3+b1	1，509。2 kB	6，828。0 kB	[檔案列表]