套件：barrnap（0.9+dfsg-4）

[ 原始碼： barrnap  ]

rapid ribosomal RNA prediction

Barrnap (BAsic Rapid Ribosomal RNA Predictor) predicts the location of ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S), mitochondria (12S,16S) and eukaryotes (5S,5.8S,28S,18S).

It takes FASTA DNA sequence as input, and writes GFF3 as output. It uses the NHMMER tool that comes with HMMER 3.1 for HMM searching in RNA:DNA style. Multithreading is supported and one can expect roughly linear speed-ups with more CPUs.

標籤: 領域: 生物學, 生物資訊學, 實做語言: implemented-in::perl, interface::commandline, 角色: 程式, Purpose: use::searching, works-with::biological-sequence

其他與 barrnap 有關的套件

• dep: bedtools

  suite of utilities for comparing genomic features

• dep: hmmer

  profile hidden Markov models for protein sequence analysis

• dep: perl

  Larry Wall's Practical Extraction and Report Language

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硬體架構	套件大小	安裝後大小	檔案
all	513。6 kB	3，170。0 kB	[檔案列表]