[ 原始碼： pyranges ]
套件：python3-pyranges（0.0.111+ds-8）
2D representation of genomic intervals and their annotations
A PyRanges object must have the columns Chromosome, Start and End. These describe the genomic position and function as implicit row labels. A Strand column is optional and adds strand information to the intervals. Any other columns are allowed and are considered metadata.
The structure can be filled from .bed, .bam or .gff files, also from tabular or textual representations.
其他與 python3-pyranges 有關的套件
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-natsort
- Natural sorting for Python (Python3)
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- dep: python3-ncls
- datastructure for interval overlap queries
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- dep: python3-pandas
- data structures for "relational" or "labeled" data
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- dep: python3-pyrle
- run length arithmetic in Python
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- dep: python3-sorted-nearest
- Cython helper library for pyranges
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- dep: python3-tabulate
- pretty-print tabular data in Python3
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- sug: python-pyranges-doc
- 套件暫時不可用