套件：mauve-aligner（2.4.0+4736-1）

[ 原始碼： mauve-aligner  ]

multiple genome alignment

Mauve is a system for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignment provides a basis for research into comparative genomics and the study of evolutionary dynamics. Aligning whole genomes is a fundamentally different problem than aligning short sequences.

Mauve has been developed with the idea that a multiple genome aligner should require only modest computational resources. It employs algorithmic techniques that scale well in the amount of sequence being aligned. For example, a pair of Y. pestis genomes can be aligned in under a minute, while a group of 9 divergent Enterobacterial genomes can be aligned in a few hours.

Mauve computes and interactively visualizes genome sequence comparisons. Using FastA or GenBank sequence data, Mauve constructs multiple genome alignments that identify large-scale rearrangement, gene gain, gene loss, indels, and nucleotide substutition.

Mauve is developed at the University of Wisconsin.

其他與 mauve-aligner 有關的套件

• dep: icedtea-netx-common

  本虛擬套件由這些套件填實： icedtea-netx

• dep: java-wrappers

  wrappers for java executables

• dep: libbiojava-java

  Java API to biological data and applications (default version)

• dep: libbiojava1.7-java

  Java API to biological data and applications (version 1.7)

• dep: libcommons-cli-java

  Command line arguments and options parsing library

• dep: libdbus-java

  simple interprocess messaging system (Java implementation)

• dep: libunixsocket-java

  Unix socket API and bindings for Java

• dep: libzeus-jscl-java

  Zeus Java Swing Components Library

• dep: progressivemauve

  multiple genome alignment algorithms

下載 mauve-aligner

下載可用於所有硬體架構的

硬體架構	套件大小	安裝後大小	檔案
i386	479。9 kB	546。0 kB	[檔案列表]