套件：trf（4.09.1-4）
locate and display tandem repeats in DNA sequences
A tandem repeat in DNA is two or more adjacent, approximate copies of a pattern of nucleotides. Tandem Repeats Finder is a program to locate and display tandem repeats in DNA sequences. In order to use the program, the user submits a sequence in FASTA format. There is no need to specify the pattern, the size of the pattern or any other parameter. The output consists of two files: a repeat table file and an alignment file. The repeat table, viewable in a web browser, contains information about each repeat, including its location, size, number of copies and nucleotide content. Clicking on the location indices for one of the table entries opens a second browser page that shows an alignment of the copies against a consensus pattern. The program is very fast, analyzing sequences on the order of .5Mb in just a few seconds. Submitted sequences may be of arbitrary length. Repeats with pattern size in the range from 1 to 2000 bases are detected.
下載 trf
| 硬體架構 | 套件大小 | 安裝後大小 | 檔案 |
|---|---|---|---|
| amd64 | 56。4 kB | 167。0 kB | [檔案列表] |
| arm64 | 52。2 kB | 155。0 kB | [檔案列表] |
| armel | 54。7 kB | 162。0 kB | [檔案列表] |
| armhf | 52。8 kB | 142。0 kB | [檔案列表] |
| i386 | 55。8 kB | 174。0 kB | [檔案列表] |
| mips64el | 55。1 kB | 175。0 kB | [檔案列表] |
| mipsel | 54。6 kB | 170。0 kB | [檔案列表] |
| ppc64el | 57。6 kB | 183。0 kB | [檔案列表] |
| s390x | 54。0 kB | 163。0 kB | [檔案列表] |