[ 原始碼： resfinder ]
套件：resfinder（3.2-3）
identify acquired antimicrobial resistance genes
ResFinder identifies acquired antimicrobial resistance genes in total or partial sequenced isolates of bacteria.
ResFinder that uses BLAST for identification of acquired antimicrobial resistance genes in whole-genome data. As input, the method can use both pre-assembled, complete or partial genomes, and short sequence reads from four different sequencing platforms. The method was evaluated on 1862 GenBank files containing 1411 different resistance genes, as well as on 23 de-novo-sequenced isolates.
其他與 resfinder 有關的套件
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- dep: ncbi-blast+-legacy
- NCBI Blast legacy call script
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-cgecore
- Python3 module for the Center for Genomic Epidemiology
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- dep: python3-distutils
- distutils package for Python 3.x
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- dep: python3-tabulate
- pretty-print tabular data in Python3
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- dep: resfinder-db
- ResFinder database is a curated database of acquired resistance genes