[ 源代码： resfinder ]
软件包：resfinder（3.2-3）
identify acquired antimicrobial resistance genes
ResFinder identifies acquired antimicrobial resistance genes in total or partial sequenced isolates of bacteria.
ResFinder that uses BLAST for identification of acquired antimicrobial resistance genes in whole-genome data. As input, the method can use both pre-assembled, complete or partial genomes, and short sequence reads from four different sequencing platforms. The method was evaluated on 1862 GenBank files containing 1411 different resistance genes, as well as on 23 de-novo-sequenced isolates.
其他与 resfinder 有关的软件包
|
|
|
|
-
- dep: ncbi-blast+-legacy
- NCBI Blast legacy call script
-
- dep: python3
- 交互式高级面向对象语言（默认 python3 版本）
-
- dep: python3-cgecore
- Python3 module for the Center for Genomic Epidemiology
-
- dep: python3-distutils
- Python 3.x 的 distutils 软件包
-
- dep: python3-tabulate
- pretty-print tabular data in Python3
-
- dep: resfinder-db
- ResFinder database is a curated database of acquired resistance genes