[ 原始碼： snakemake ]
套件：snakemake（5.24.1-2）
pythonic workflow management system
Build systems like GNU Make are frequently used to create complicated workflows, e.g. in bioinformatics. This project aims to reduce the complexity of creating workflows by providing a clean and modern domain specific language (DSL) in Python style, together with a fast and comfortable execution environment.
其他與 snakemake 有關的套件
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- dep: ca-certificates
- Common CA certificates
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- dep: libjs-bootstrap
- HTML, CSS and JS framework
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- dep: libjs-d3
- JavaScript visualization library for HTML and SVG
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- dep: libjs-jquery
- JavaScript library for dynamic web applications
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- dep: libjs-mathjax
- JavaScript display engine for LaTeX and MathML
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- dep: libjs-sphinxdoc (>= 2.4.3-5~)
- JavaScript support for Sphinx documentation
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- dep: node-dagre-d3-renderer
- D3-based renderer for Dagre
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-appdirs
- determining appropriate platform-specific directories (Python 3)
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- dep: python3-configargparse
- replacement for argparse with config files and environment variables (Python 3)
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- dep: python3-datrie
- Super-fast, efficiently stored Trie for Python 3
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- dep: python3-docutils
- text processing system for reStructuredText (implemented in Python 3)
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- dep: python3-git
- Python library to interact with Git repositories - Python 3.x
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- dep: python3-jsonschema
- An(other) implementation of JSON Schema (Draft 3 and 4) - Python 3.x
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- dep: python3-nbformat
- Jupyter notebook format (Python 3)
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- dep: python3-pkg-resources
- Package Discovery and Resource Access using pkg_resources
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- dep: python3-psutil
- module providing convenience functions for managing processes (Python3)
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- dep: python3-pulp (<< 2.0~)
- LP modeler - Python 3.x
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- dep: python3-ratelimiter
- simple Python library for limiting the rate of operations
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- dep: python3-requests
- elegant and simple HTTP library for Python3, built for human beings
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- dep: python3-toposort
- topological sort algorithm - Python 3 module
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- dep: python3-wrapt
- decorators, wrappers and monkey patching. - Python 3.x
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- dep: python3-yaml
- YAML parser and emitter for Python3
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- dep: sphinx-rtd-theme-common (>= 0.5.1+dfsg)
- sphinx theme from readthedocs.org (common files)
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- rec: cwltool
- Common Workflow Language reference implementation
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- rec: imagemagick
- image manipulation programs -- binaries
同時作為一個虛擬套件由這些套件填實： graphicsmagick-imagemagick-compat, imagemagick-6.q16
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- rec: python3-azure-storage
- Microsoft Azure Storage Library for Python 3.x
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- rec: python3-biopython
- Python3 library for bioinformatics
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- rec: python3-boto3
- Python interface to Amazon's Web Services - Python 3.x
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- rec: python3-botocore
- Low-level, data-driven core of boto 3 (Python 3)
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- rec: python3-drmaa
- 套件暫時不可用
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- rec: python3-dropbox
- Official Dropbox API Client (Python3 version)
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- rec: python3-flask
- micro web framework based on Werkzeug and Jinja2 - Python 3.x
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- rec: python3-ftputil
- high-level FTP client library for Python
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- rec: python3-irodsclient
- Client API for iRods
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- rec: python3-jinja2
- small but fast and easy to use stand-alone template engine
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- rec: python3-kubernetes
- Kubernetes Python client - Python 3.x
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- rec: python3-networkx
- tool to create, manipulate and study complex networks (Python3)
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- rec: python3-pygments
- syntax highlighting package written in Python 3
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- rec: python3-pygraphviz
- Python interface to the Graphviz graph layout and visualization package (Python 3)
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- rec: python3-tz
- Python3 version of the Olson timezone database
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- rec: python3-urllib3
- HTTP library with thread-safe connection pooling for Python3
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- rec: python3-yappi
- Yet Another Python Profiler - Python 3.x