Paket: snakemake (5.24.1-2)

[ Källkod: snakemake  ]

pythonic workflow management system

Build systems like GNU Make are frequently used to create complicated workflows, e.g. in bioinformatics. This project aims to reduce the complexity of creating workflows by providing a clean and modern domain specific language (DSL) in Python style, together with a fast and comfortable execution environment.

Andra paket besläktade med snakemake

• dep: ca-certificates

  Common CA certificates

• dep: libjs-bootstrap

  HTML, CSS and JS framework

• dep: libjs-d3

  JavaScript visualization library for HTML and SVG

• dep: libjs-jquery

  JavaScript library for dynamic web applications

• dep: libjs-mathjax

  JavaScript display engine for LaTeX and MathML

• dep: libjs-sphinxdoc (>= 2.4.3-5~)

  JavaScript support for Sphinx documentation

• dep: node-dagre-d3-renderer

  D3-based renderer for Dagre

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-appdirs

  determining appropriate platform-specific directories (Python 3)

• dep: python3-configargparse

  replacement for argparse with config files and environment variables (Python 3)

• dep: python3-datrie

  Super-fast, efficiently stored Trie for Python 3

• dep: python3-docutils

  text processing system for reStructuredText (implemented in Python 3)

• dep: python3-git

  Python library to interact with Git repositories - Python 3.x

• dep: python3-jsonschema

  An(other) implementation of JSON Schema (Draft 3 and 4) - Python 3.x

• dep: python3-nbformat

  Jupyter notebook format (Python 3)

• dep: python3-pkg-resources

  Package Discovery and Resource Access using pkg_resources

• dep: python3-psutil

  module providing convenience functions for managing processes (Python3)

• dep: python3-pulp (<< 2.0~)

  LP modeler - Python 3.x

• dep: python3-ratelimiter

  simple Python library for limiting the rate of operations

• dep: python3-requests

  elegant and simple HTTP library for Python3, built for human beings

• dep: python3-toposort

  topological sort algorithm - Python 3 module

• dep: python3-wrapt

  decorators, wrappers and monkey patching. - Python 3.x

• dep: python3-yaml

  YAML parser and emitter for Python3

• dep: sphinx-rtd-theme-common (>= 0.5.1+dfsg)

  sphinx theme from readthedocs.org (common files)

• rec: cwltool

  Common Workflow Language reference implementation

• rec: imagemagick

  image manipulation programs -- binaries
  också ett virtuellt paket som tillhandahålls av graphicsmagick-imagemagick-compat, imagemagick-6.q16

• rec: python3-azure-storage

  Microsoft Azure Storage Library for Python 3.x

• rec: python3-biopython

  Python3 library for bioinformatics

• rec: python3-boto3

  Python interface to Amazon's Web Services - Python 3.x

• rec: python3-botocore

  Low-level, data-driven core of boto 3 (Python 3)

• rec: python3-drmaa

  Paketet inte tillgängligt

• rec: python3-dropbox

  Official Dropbox API Client (Python3 version)

• rec: python3-flask

  micro web framework based on Werkzeug and Jinja2 - Python 3.x

• rec: python3-ftputil

  high-level FTP client library for Python

• rec: python3-irodsclient

  Client API for iRods

• rec: python3-jinja2

  small but fast and easy to use stand-alone template engine

• rec: python3-kubernetes

  Kubernetes Python client - Python 3.x

• rec: python3-networkx

  tool to create, manipulate and study complex networks (Python3)

• rec: python3-pygments

  syntax highlighting package written in Python 3

• rec: python3-pygraphviz

  Python interface to the Graphviz graph layout and visualization package (Python 3)

• rec: python3-tz

  Python3 version of the Olson timezone database

• rec: python3-urllib3

  HTTP library with thread-safe connection pooling for Python3

• rec: python3-yappi

  Yet Another Python Profiler - Python 3.x

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Arkitektur	Paketstorlek	Installerad storlek	Filer
all	5.964,1 kbyte	21.382,0 kbyte	[filförteckning]