套件：qiime（2020.11.1-1）
qiime 的相關連結
Debian 的資源：
下載原始碼套件 qiime：
維護小組：
- Debian Med Packaging Team (QA 頁面, 郵件存檔)
- Steffen Moeller (QA 頁面)
- Liubov Chuprikova (QA 頁面)
- Andreas Tille (QA 頁面)
- Étienne Mollier (QA 頁面)
外部的資源：
- 主頁 [qiime2.org]
相似套件：
Quantitative Insights Into Microbial Ecology
QIIME 2 is a powerful, extensible, and decentralized microbiome analysis package with a focus on data and analysis transparency. QIIME 2 enables researchers to start an analysis with raw DNA sequence data and finish with publication-quality figures and statistical results. Key features:
* Integrated and automatic tracking of data provenance * Semantic type system * Plugin system for extending microbiome analysis functionality * Support for multiple types of user interfaces (e.g. API, command line,graphical)
QIIME 2 is a complete redesign and rewrite of the QIIME 1 microbiome analysis pipeline. QIIME 2 will address many of the limitations of QIIME 1, while retaining the features that makes QIIME 1 a powerful and widely-used analysis pipeline.
QIIME 2 currently supports an initial end-to-end microbiome analysis pipeline. New functionality will regularly become available through QIIME 2 plugins. You can view a list of plugins that are currently available on the QIIME 2 plugin availability page. The future plugins page lists plugins that are being developed.
其他與 qiime 有關的套件
|
|
|
|
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
-
- dep: python3-bibtexparser
- Python 3 library to parse bibtex files
-
- dep: python3-dateutil
- powerful extensions to the standard Python 3 datetime module
-
- dep: python3-decorator
- simplify usage of Python decorators by programmers
-
- dep: python3-networkx
- tool to create, manipulate and study complex networks (Python3)
-
- dep: python3-pandas
- data structures for "relational" or "labeled" data
-
- dep: python3-pyparsing
- alternative to creating and executing simple grammars - Python 3.x
-
- dep: python3-tzlocal
- tzinfo object for the local timezone
-
- dep: python3-yaml
- YAML parser and emitter for Python3
-
- rec: q2-cutadapt
- QIIME 2 plugin to work with adapters in sequence data
-
- rec: q2-demux
- QIIME 2 plugin for demultiplexing of sequence reads
-
- rec: q2-feature-classifier
- QIIME 2 plugin supporting taxonomic classification
-
- rec: q2-feature-table
- QIIME 2 plugin supporting operations on feature tables
-
- rec: q2-metadata
- QIIME 2 plugin for working with and visualizing Metadata
-
- rec: q2-quality-filter
- QIIME2 plugin for PHRED-based filtering and trimming
-
- rec: q2-types
- QIIME 2 plugin defining types for microbiome analysis
-
- rec: q2cli
- Click-based command line interface for QIIME 2
-
- rec: q2templates
- Design template package for QIIME 2 Plugins