套件：miniasm（0.3+dfsg-2）

[ 原始碼： miniasm  ]

ultrafast de novo assembler for long noisy DNA sequencing reads

Miniasm is an experimental very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. It simply concatenates pieces of read sequences to generate the final unitig sequences. Thus the per-base error rate is similar to the raw input reads.

標籤: 生物學: 核酸, 領域: 生物學, field::biology:bioinformatics, implemented-in::c, 使用者介面: 命令行, 角色: role::program, science::calculation, Purpose: Calculating, use::comparing, works-with::biological-sequence

其他與 miniasm 有關的套件

• dep: libc6 (>= 2.14)

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

• dep: zlib1g (>= 1:1.1.4)

  壓縮函式庫 - 跑程式時用(runtime)

• rec: minimap

  tool for approximate mapping of long biosequences such as DNA reads

下載 miniasm

下載可用於所有硬體架構的

硬體架構	套件大小	安裝後大小	檔案
amd64	29。6 kB	70。0 kB	[檔案列表]